(6 nodes) Two-component sensor kinase N-terminal network (Pandoraea sp. ISTKB)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ODP32331.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
	ODP32893.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	ODP31181.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	ODP33934.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	ODP33819.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	ODP33334.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)

Your Current Organism:

Pandoraea sp. ISTKB

NCBI taxonomy Id: 1586708
Other names: P. sp. ISTKB

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ODP31181.1	ODP32331.1	A9762_07055	A9762_23650	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ODP31181.1	ODP32893.1	A9762_07055	A9762_04205	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
ODP31181.1	ODP33334.1	A9762_07055	A9762_19460	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
ODP31181.1	ODP33819.1	A9762_07055	A9762_17175	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
ODP31181.1	ODP33934.1	A9762_07055	A9762_16685	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
ODP32331.1	ODP31181.1	A9762_23650	A9762_07055	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ODP32331.1	ODP33334.1	A9762_23650	A9762_19460	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
ODP32331.1	ODP33819.1	A9762_23650	A9762_17175	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
ODP32331.1	ODP33934.1	A9762_23650	A9762_16685	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
ODP32893.1	ODP31181.1	A9762_04205	A9762_07055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
ODP32893.1	ODP33334.1	A9762_04205	A9762_19460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
ODP32893.1	ODP33819.1	A9762_04205	A9762_17175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ODP32893.1	ODP33934.1	A9762_04205	A9762_16685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
ODP33334.1	ODP31181.1	A9762_19460	A9762_07055	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
ODP33334.1	ODP32331.1	A9762_19460	A9762_23650	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
ODP33334.1	ODP32893.1	A9762_19460	A9762_04205	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
ODP33334.1	ODP33819.1	A9762_19460	A9762_17175	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
ODP33334.1	ODP33934.1	A9762_19460	A9762_16685	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
ODP33819.1	ODP31181.1	A9762_17175	A9762_07055	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
ODP33819.1	ODP32331.1	A9762_17175	A9762_23650	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494