(34 nodes) HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain network (Pandoraea sp. ISTKB)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ompR	Part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)
	ODP35874.1	Two-component sensor histidine kinase; Member of a two-component regulatory system. (459 aa)
	ODP35714.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (483 aa)
	ODP33965.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (661 aa)
	ODP32864.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (526 aa)
	ODP32964.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (537 aa)
	ODP32999.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	ODP32113.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (511 aa)
	ODP32246.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)
	ODP31655.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa)
	ODP31187.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (370 aa)
	ODP35360.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)
	ODP35401.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (783 aa)
	ODP34745.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
	ODP34270.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	ODP33934.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	ODP33819.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	ODP33710.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
	ODP33642.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	ODP33446.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	ODP33406.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
	ODP33334.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)
	A9762_20230	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	ODP33116.1	Hypothetical protein; Member of a two-component regulatory system. (487 aa)
	ODP32702.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (605 aa)
	ODP32555.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
	ODP32004.1	Two-component sensor histidine kinase; Member of a two-component regulatory system. (477 aa)
	A9762_24265	4-amino-4-deoxy-L-arabinose transferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	ODP31967.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	ODP31886.1	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (807 aa)
	ODP31817.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	ODP31758.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (565 aa)
	ODP31439.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
	ODP31074.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (626 aa)

Your Current Organism:

Pandoraea sp. ISTKB

NCBI taxonomy Id: 1586708
Other names: P. sp. ISTKB

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A9762_20230	ODP31187.1	A9762_20230	A9762_07095	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.501
A9762_20230	ODP31758.1	A9762_20230	A9762_25720	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
A9762_20230	ODP31886.1	A9762_20230	A9762_25165	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
A9762_20230	ODP32004.1	A9762_20230	A9762_24225	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Member of a two-component regulatory system.	0.516
A9762_20230	ODP32113.1	A9762_20230	A9762_05165	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.802
A9762_20230	ODP33116.1	A9762_20230	A9762_20990	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Member of a two-component regulatory system.	0.519
A9762_20230	ODP33334.1	A9762_20230	A9762_19460	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
A9762_20230	ODP33446.1	A9762_20230	A9762_18840	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
A9762_20230	ODP33819.1	A9762_20230	A9762_17175	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
A9762_20230	ODP33934.1	A9762_20230	A9762_16685	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
A9762_20230	ODP33965.1	A9762_20230	A9762_02490	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
A9762_20230	ODP35714.1	A9762_20230	A9762_01605	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.464
A9762_20230	ODP35874.1	A9762_20230	A9762_00625	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Member of a two-component regulatory system.	0.511
A9762_24265	ODP31187.1	A9762_24265	A9762_07095	4-amino-4-deoxy-L-arabinose transferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.526
A9762_24265	ODP31758.1	A9762_24265	A9762_25720	4-amino-4-deoxy-L-arabinose transferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
A9762_24265	ODP31886.1	A9762_24265	A9762_25165	4-amino-4-deoxy-L-arabinose transferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
A9762_24265	ODP32004.1	A9762_24265	A9762_24225	4-amino-4-deoxy-L-arabinose transferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Member of a two-component regulatory system.	0.485
A9762_24265	ODP32113.1	A9762_24265	A9762_05165	4-amino-4-deoxy-L-arabinose transferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.811
A9762_24265	ODP33116.1	A9762_24265	A9762_20990	4-amino-4-deoxy-L-arabinose transferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Member of a two-component regulatory system.	0.523
A9762_24265	ODP33334.1	A9762_24265	A9762_19460	4-amino-4-deoxy-L-arabinose transferase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491