(13 nodes) DNA recombination and repair protein Rad51-like, C-terminal, and RQC domain network (Actinidia chinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CEY00_Acc31893	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (914 aa)
	CEY00_Acc25896	DNA repair protein. (319 aa)
	CEY00_Acc23425	DNA repair protein. (260 aa)
	CEY00_Acc17736	DNA topoisomerase. (1178 aa)
	CEY00_Acc16593	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (691 aa)
	CEY00_Acc17039	Crossover junction endonuclease. (672 aa)
	CEY00_Acc13112	Tudor domain-containing protein. (429 aa)
	CEY00_Acc13499	Meiotic recombination protein DMC1; Belongs to the RecA family. (343 aa)
	CEY00_Acc10117	DNA repair protein. (179 aa)
	CEY00_Acc10623	DNA repair protein. (348 aa)
	CEY00_Acc01827	Protein BREAST CANCER SUSCEPTIBILITY 2 B like. (1108 aa)
	CEY00_Acc18723	DNA repair protein. (344 aa)
	CEY00_Acc00758	DNA repair protein. (297 aa)

Your Current Organism:

Actinidia chinensis

NCBI taxonomy Id: 1590841
Other names: A. chinensis var. chinensis, Actinidia chinensis var. chinensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEY00_Acc00758	CEY00_Acc01827	A0A2R6S1T0	A0A2R6RXH6	DNA repair protein.	Protein BREAST CANCER SUSCEPTIBILITY 2 B like.	0.974
CEY00_Acc00758	CEY00_Acc10623	A0A2R6S1T0	A0A2R6R6G3	DNA repair protein.	DNA repair protein.	0.989
CEY00_Acc00758	CEY00_Acc13112	A0A2R6S1T0	A0A2R6QV36	DNA repair protein.	Tudor domain-containing protein.	0.876
CEY00_Acc00758	CEY00_Acc13499	A0A2R6S1T0	A0A2R6QW82	DNA repair protein.	Meiotic recombination protein DMC1; Belongs to the RecA family.	0.989
CEY00_Acc00758	CEY00_Acc16593	A0A2R6S1T0	A0A2R6QJL4	DNA repair protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.991
CEY00_Acc00758	CEY00_Acc17039	A0A2R6S1T0	A0A2R6QKM4	DNA repair protein.	Crossover junction endonuclease.	0.897
CEY00_Acc00758	CEY00_Acc17736	A0A2R6S1T0	A0A2R6QFI3	DNA repair protein.	DNA topoisomerase.	0.869
CEY00_Acc00758	CEY00_Acc18723	A0A2R6S1T0	A0A2R6S1B2	DNA repair protein.	DNA repair protein.	0.930
CEY00_Acc00758	CEY00_Acc23425	A0A2R6S1T0	A0A2R6Q5B3	DNA repair protein.	DNA repair protein.	0.928
CEY00_Acc00758	CEY00_Acc25896	A0A2R6S1T0	A0A2R6PPZ2	DNA repair protein.	DNA repair protein.	0.884
CEY00_Acc00758	CEY00_Acc31893	A0A2R6S1T0	A0A2R6P711	DNA repair protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.991
CEY00_Acc01827	CEY00_Acc00758	A0A2R6RXH6	A0A2R6S1T0	Protein BREAST CANCER SUSCEPTIBILITY 2 B like.	DNA repair protein.	0.974
CEY00_Acc01827	CEY00_Acc10117	A0A2R6RXH6	A0A2R6R4Z8	Protein BREAST CANCER SUSCEPTIBILITY 2 B like.	DNA repair protein.	0.974
CEY00_Acc01827	CEY00_Acc10623	A0A2R6RXH6	A0A2R6R6G3	Protein BREAST CANCER SUSCEPTIBILITY 2 B like.	DNA repair protein.	0.988
CEY00_Acc01827	CEY00_Acc13112	A0A2R6RXH6	A0A2R6QV36	Protein BREAST CANCER SUSCEPTIBILITY 2 B like.	Tudor domain-containing protein.	0.778
CEY00_Acc01827	CEY00_Acc13499	A0A2R6RXH6	A0A2R6QW82	Protein BREAST CANCER SUSCEPTIBILITY 2 B like.	Meiotic recombination protein DMC1; Belongs to the RecA family.	0.988
CEY00_Acc01827	CEY00_Acc16593	A0A2R6RXH6	A0A2R6QJL4	Protein BREAST CANCER SUSCEPTIBILITY 2 B like.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.999
CEY00_Acc01827	CEY00_Acc17039	A0A2R6RXH6	A0A2R6QKM4	Protein BREAST CANCER SUSCEPTIBILITY 2 B like.	Crossover junction endonuclease.	0.862
CEY00_Acc01827	CEY00_Acc17736	A0A2R6RXH6	A0A2R6QFI3	Protein BREAST CANCER SUSCEPTIBILITY 2 B like.	DNA topoisomerase.	0.854
CEY00_Acc01827	CEY00_Acc18723	A0A2R6RXH6	A0A2R6S1B2	Protein BREAST CANCER SUSCEPTIBILITY 2 B like.	DNA repair protein.	0.909