(7 nodes) Mixed, incl. Small ribosomal subunit, and Translation elongation factor EF1B/ribosomal protein S6 network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpsL	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. (125 aa)
	rpsG	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
	rpsJ	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
	rpsI	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (130 aa)
	rpsF	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. (127 aa)
	rpsB	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. (248 aa)
	rpsP	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. (84 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpsB	rpsF	Daro_1742	Daro_1216	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsB	rpsG	Daro_1742	Daro_0315	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rpsB	rpsI	Daro_1742	Daro_0650	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsB	rpsJ	Daro_1742	Daro_0318	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsB	rpsL	Daro_1742	Daro_0314	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsB	rpsP	Daro_1742	Daro_3066	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsF	rpsB	Daro_1216	Daro_1742	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsF	rpsG	Daro_1216	Daro_0315	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rpsF	rpsI	Daro_1216	Daro_0650	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsF	rpsJ	Daro_1216	Daro_0318	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsF	rpsL	Daro_1216	Daro_0314	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsF	rpsP	Daro_1216	Daro_3066	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsG	rpsB	Daro_0315	Daro_1742	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsG	rpsF	Daro_0315	Daro_1216	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsG	rpsI	Daro_0315	Daro_0650	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsG	rpsJ	Daro_0315	Daro_0318	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsG	rpsL	Daro_0315	Daro_0314	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsG	rpsP	Daro_0315	Daro_3066	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsI	rpsB	Daro_0650	Daro_1742	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsI	rpsF	Daro_0650	Daro_1216	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.999