(45 nodes) Mixed, incl. Protein secretion by the type II secretion system, and Pilus assembly network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_0019	DNA protecting protein DprA. (358 aa)
	Daro_0617	Phosphoribosyltransferase. (247 aa)
	Daro_0637	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (284 aa)
	Daro_0638	Type II secretion system protein. (408 aa)
	Daro_0639	Type II secretion system protein E:General secretory system II, protein E, N-terminal. (571 aa)
	Daro_0860	Nucleoside:H+ symporter:Major facilitator superfamily MFS_1. (395 aa)
	Daro_0862	Entericidin EcnAB. (71 aa)
	Daro_0867	Hypothetical protein. (197 aa)
	truA	tRNA pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (262 aa)
	Daro_0874	Sporulation related protein. (239 aa)
	Daro_0875	Colicin V production protein. (163 aa)
	Daro_0879	Type II secretion system protein E:General secretory system II, protein E, N-terminal. (569 aa)
	Daro_0880	Type II secretion system protein. (406 aa)
	Daro_0881	Hypothetical protein. (144 aa)
	Daro_0882	General secretion pathway protein H. (204 aa)
	Daro_0883	General secretion pathway protein H. (146 aa)
	Daro_0884	Prokaryotic N-terminal methylation site. (176 aa)
	Daro_0885	Hypothetical protein. (187 aa)
	Daro_0886	General secretion pathway protein H. (283 aa)
	Daro_0887	MSHA biogenesis protein MshP. (153 aa)
	Daro_0888	Hypothetical protein. (1191 aa)
	Daro_0889	Hypothetical protein. (308 aa)
	Daro_0890	Hypothetical protein. (216 aa)
	Daro_0891	Hypothetical protein. (226 aa)
	Daro_0892	Hypothetical protein. (131 aa)
	Daro_0893	Type II and III secretion system protein:Secretin, N-terminal:Secretin/TonB, short N-terminal. (585 aa)
	Daro_0894	General secretion pathway protein, ATPase. (275 aa)
	Daro_0895	TPR repeat. (354 aa)
	Daro_1151	Type II secretion system protein E:General secretory system II, protein E, N-terminal. (622 aa)
	Daro_2555	DNA repair protein RadC; Belongs to the UPF0758 family. (193 aa)
	Daro_2832	ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2. (772 aa)
	Daro_3142	DNA replication and repair protein RadC; Belongs to the UPF0758 family. (226 aa)
	Daro_3216	Type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal. (667 aa)
	Daro_3217	Prokaryotic N-terminal methylation site. (159 aa)
	Daro_3218	General secretion pathway protein G. (126 aa)
	Daro_3219	Conserved hypothetical protein. (177 aa)
	Daro_3221	General secretion pathway protein G. (156 aa)
	Daro_3222	Type II secretion system protein. (394 aa)
	Daro_3223	Type II secretion system protein E. (564 aa)
	Daro_3224	Hypothetical protein. (255 aa)
	Daro_3225	Conserved hypothetical protein. (178 aa)
	Daro_3226	Hypothetical protein. (190 aa)
	Daro_3227	Probable proline-rich transmembrane protein. (173 aa)
	Daro_3407	Type II secretion system protein E:General secretory system II, protein E, N-terminal. (568 aa)
	Daro_3408	Type II secretion system protein. (399 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Daro_0019	Daro_0617	Daro_0019	Daro_0617	DNA protecting protein DprA.	Phosphoribosyltransferase.	0.926
Daro_0019	Daro_0637	Daro_0019	Daro_0637	DNA protecting protein DprA.	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.794
Daro_0019	Daro_0638	Daro_0019	Daro_0638	DNA protecting protein DprA.	Type II secretion system protein.	0.403
Daro_0019	Daro_0880	Daro_0019	Daro_0880	DNA protecting protein DprA.	Type II secretion system protein.	0.403
Daro_0019	Daro_2555	Daro_0019	Daro_2555	DNA protecting protein DprA.	DNA repair protein RadC; Belongs to the UPF0758 family.	0.557
Daro_0019	Daro_2832	Daro_0019	Daro_2832	DNA protecting protein DprA.	ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2.	0.907
Daro_0019	Daro_3142	Daro_0019	Daro_3142	DNA protecting protein DprA.	DNA replication and repair protein RadC; Belongs to the UPF0758 family.	0.555
Daro_0019	Daro_3218	Daro_0019	Daro_3218	DNA protecting protein DprA.	General secretion pathway protein G.	0.425
Daro_0019	Daro_3222	Daro_0019	Daro_3222	DNA protecting protein DprA.	Type II secretion system protein.	0.403
Daro_0019	Daro_3408	Daro_0019	Daro_3408	DNA protecting protein DprA.	Type II secretion system protein.	0.403
Daro_0617	Daro_0019	Daro_0617	Daro_0019	Phosphoribosyltransferase.	DNA protecting protein DprA.	0.926
Daro_0617	Daro_2555	Daro_0617	Daro_2555	Phosphoribosyltransferase.	DNA repair protein RadC; Belongs to the UPF0758 family.	0.641
Daro_0617	Daro_2832	Daro_0617	Daro_2832	Phosphoribosyltransferase.	ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2.	0.893
Daro_0617	Daro_3142	Daro_0617	Daro_3142	Phosphoribosyltransferase.	DNA replication and repair protein RadC; Belongs to the UPF0758 family.	0.641
Daro_0637	Daro_0019	Daro_0637	Daro_0019	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	DNA protecting protein DprA.	0.794
Daro_0637	Daro_0638	Daro_0637	Daro_0638	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein.	0.974
Daro_0637	Daro_0639	Daro_0637	Daro_0639	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein E:General secretory system II, protein E, N-terminal.	0.962
Daro_0637	Daro_0879	Daro_0637	Daro_0879	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein E:General secretory system II, protein E, N-terminal.	0.850
Daro_0637	Daro_0880	Daro_0637	Daro_0880	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein.	0.863
Daro_0637	Daro_0882	Daro_0637	Daro_0882	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	General secretion pathway protein H.	0.447