(13 nodes) Protein secretion by the type II secretion system, and Pilus assembly network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_0882	General secretion pathway protein H. (204 aa)
	Daro_0883	General secretion pathway protein H. (146 aa)
	Daro_0884	Prokaryotic N-terminal methylation site. (176 aa)
	Daro_0885	Hypothetical protein. (187 aa)
	Daro_0886	General secretion pathway protein H. (283 aa)
	Daro_0887	MSHA biogenesis protein MshP. (153 aa)
	Daro_0888	Hypothetical protein. (1191 aa)
	Daro_0889	Hypothetical protein. (308 aa)
	Daro_0890	Hypothetical protein. (216 aa)
	Daro_0891	Hypothetical protein. (226 aa)
	Daro_0893	Type II and III secretion system protein:Secretin, N-terminal:Secretin/TonB, short N-terminal. (585 aa)
	Daro_0894	General secretion pathway protein, ATPase. (275 aa)
	Daro_0895	TPR repeat. (354 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daro_0882	Daro_0883	General secretion pathway protein H.	General secretion pathway protein H.	0.802
Daro_0882	Daro_0884	General secretion pathway protein H.	Prokaryotic N-terminal methylation site.	0.914
Daro_0882	Daro_0885	General secretion pathway protein H.	Hypothetical protein.	0.931
Daro_0882	Daro_0886	General secretion pathway protein H.	General secretion pathway protein H.	0.930
Daro_0882	Daro_0887	General secretion pathway protein H.	MSHA biogenesis protein MshP.	0.915
Daro_0882	Daro_0888	General secretion pathway protein H.	Hypothetical protein.	0.752
Daro_0882	Daro_0889	General secretion pathway protein H.	Hypothetical protein.	0.875
Daro_0882	Daro_0890	General secretion pathway protein H.	Hypothetical protein.	0.874
Daro_0882	Daro_0891	General secretion pathway protein H.	Hypothetical protein.	0.879
Daro_0882	Daro_0893	General secretion pathway protein H.	Type II and III secretion system protein:Secretin, N-terminal:Secretin/TonB, short N-terminal.	0.871
Daro_0882	Daro_0894	General secretion pathway protein H.	General secretion pathway protein, ATPase.	0.654
Daro_0882	Daro_0895	General secretion pathway protein H.	TPR repeat.	0.833
Daro_0883	Daro_0882	General secretion pathway protein H.	General secretion pathway protein H.	0.802
Daro_0883	Daro_0884	General secretion pathway protein H.	Prokaryotic N-terminal methylation site.	0.922
Daro_0883	Daro_0885	General secretion pathway protein H.	Hypothetical protein.	0.924
Daro_0883	Daro_0886	General secretion pathway protein H.	General secretion pathway protein H.	0.938
Daro_0883	Daro_0887	General secretion pathway protein H.	MSHA biogenesis protein MshP.	0.899
Daro_0883	Daro_0888	General secretion pathway protein H.	Hypothetical protein.	0.788
Daro_0883	Daro_0889	General secretion pathway protein H.	Hypothetical protein.	0.851
Daro_0883	Daro_0890	General secretion pathway protein H.	Hypothetical protein.	0.797