(5 nodes) Prokaryotic N-terminal methylation site network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_0882	General secretion pathway protein H. (204 aa)
	Daro_0884	Prokaryotic N-terminal methylation site. (176 aa)
	Daro_0885	Hypothetical protein. (187 aa)
	Daro_0886	General secretion pathway protein H. (283 aa)
	Daro_0887	MSHA biogenesis protein MshP. (153 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daro_0882	Daro_0884	General secretion pathway protein H.	Prokaryotic N-terminal methylation site.	0.914
Daro_0882	Daro_0885	General secretion pathway protein H.	Hypothetical protein.	0.931
Daro_0882	Daro_0886	General secretion pathway protein H.	General secretion pathway protein H.	0.930
Daro_0882	Daro_0887	General secretion pathway protein H.	MSHA biogenesis protein MshP.	0.915
Daro_0884	Daro_0882	Prokaryotic N-terminal methylation site.	General secretion pathway protein H.	0.914
Daro_0884	Daro_0885	Prokaryotic N-terminal methylation site.	Hypothetical protein.	0.952
Daro_0884	Daro_0886	Prokaryotic N-terminal methylation site.	General secretion pathway protein H.	0.956
Daro_0884	Daro_0887	Prokaryotic N-terminal methylation site.	MSHA biogenesis protein MshP.	0.957
Daro_0885	Daro_0882	Hypothetical protein.	General secretion pathway protein H.	0.931
Daro_0885	Daro_0884	Hypothetical protein.	Prokaryotic N-terminal methylation site.	0.952
Daro_0885	Daro_0886	Hypothetical protein.	General secretion pathway protein H.	0.956
Daro_0885	Daro_0887	Hypothetical protein.	MSHA biogenesis protein MshP.	0.953
Daro_0886	Daro_0882	General secretion pathway protein H.	General secretion pathway protein H.	0.930
Daro_0886	Daro_0884	General secretion pathway protein H.	Prokaryotic N-terminal methylation site.	0.956
Daro_0886	Daro_0885	General secretion pathway protein H.	Hypothetical protein.	0.956
Daro_0886	Daro_0887	General secretion pathway protein H.	MSHA biogenesis protein MshP.	0.957
Daro_0887	Daro_0882	MSHA biogenesis protein MshP.	General secretion pathway protein H.	0.915
Daro_0887	Daro_0884	MSHA biogenesis protein MshP.	Prokaryotic N-terminal methylation site.	0.957
Daro_0887	Daro_0885	MSHA biogenesis protein MshP.	Hypothetical protein.	0.953
Daro_0887	Daro_0886	MSHA biogenesis protein MshP.	General secretion pathway protein H.	0.957