(17 nodes) Mixed, incl. Type II secretion system protein GspE, N-terminal, and GspF/PilC family network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_0637	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (284 aa)
	Daro_0638	Type II secretion system protein. (408 aa)
	Daro_0639	Type II secretion system protein E:General secretory system II, protein E, N-terminal. (571 aa)
	Daro_1151	Type II secretion system protein E:General secretory system II, protein E, N-terminal. (622 aa)
	Daro_3216	Type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal. (667 aa)
	Daro_3217	Prokaryotic N-terminal methylation site. (159 aa)
	Daro_3218	General secretion pathway protein G. (126 aa)
	Daro_3219	Conserved hypothetical protein. (177 aa)
	Daro_3221	General secretion pathway protein G. (156 aa)
	Daro_3222	Type II secretion system protein. (394 aa)
	Daro_3223	Type II secretion system protein E. (564 aa)
	Daro_3224	Hypothetical protein. (255 aa)
	Daro_3225	Conserved hypothetical protein. (178 aa)
	Daro_3226	Hypothetical protein. (190 aa)
	Daro_3227	Probable proline-rich transmembrane protein. (173 aa)
	Daro_3407	Type II secretion system protein E:General secretory system II, protein E, N-terminal. (568 aa)
	Daro_3408	Type II secretion system protein. (399 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daro_0637	Daro_0638	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein.	0.974
Daro_0637	Daro_0639	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein E:General secretory system II, protein E, N-terminal.	0.962
Daro_0637	Daro_1151	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein E:General secretory system II, protein E, N-terminal.	0.848
Daro_0637	Daro_3218	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	General secretion pathway protein G.	0.515
Daro_0637	Daro_3221	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	General secretion pathway protein G.	0.697
Daro_0637	Daro_3222	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein.	0.858
Daro_0637	Daro_3223	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein E.	0.846
Daro_0637	Daro_3407	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein E:General secretory system II, protein E, N-terminal.	0.843
Daro_0637	Daro_3408	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type II secretion system protein.	0.855
Daro_0638	Daro_0637	Type II secretion system protein.	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.974
Daro_0638	Daro_0639	Type II secretion system protein.	Type II secretion system protein E:General secretory system II, protein E, N-terminal.	0.972
Daro_0638	Daro_1151	Type II secretion system protein.	Type II secretion system protein E:General secretory system II, protein E, N-terminal.	0.895
Daro_0638	Daro_3216	Type II secretion system protein.	Type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal.	0.484
Daro_0638	Daro_3217	Type II secretion system protein.	Prokaryotic N-terminal methylation site.	0.433
Daro_0638	Daro_3218	Type II secretion system protein.	General secretion pathway protein G.	0.537
Daro_0638	Daro_3219	Type II secretion system protein.	Conserved hypothetical protein.	0.433
Daro_0638	Daro_3221	Type II secretion system protein.	General secretion pathway protein G.	0.610
Daro_0638	Daro_3223	Type II secretion system protein.	Type II secretion system protein E.	0.895
Daro_0638	Daro_3407	Type II secretion system protein.	Type II secretion system protein E:General secretory system II, protein E, N-terminal.	0.894
Daro_0639	Daro_0637	Type II secretion system protein E:General secretory system II, protein E, N-terminal.	Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.962