(14 nodes) Pilus assembly, and Pilus network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_0020	Peptidoglycan-binding LysM. (343 aa)
	Daro_0210	Type IV pilus assembly protein PilM. (361 aa)
	Daro_0211	Fimbrial assembly. (189 aa)
	Daro_0212	Pilus assembly protein, PilO. (227 aa)
	Daro_0213	Pilus assembly protein, PilQ. (181 aa)
	Daro_0214	Type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal. (715 aa)
	Daro_0866	Conserved hypothetical protein. (1036 aa)
	Daro_3036	Putative Tfp pilus assembly protein tip-associated adhesin PilY1. (1544 aa)
	Daro_3037	Hypothetical protein. (213 aa)
	Daro_3038	Hypothetical protein. (332 aa)
	Daro_3039	Hypothetical protein. (128 aa)
	Daro_3040	General secretion pathway protein H. (177 aa)
	Daro_3041	General secretion pathway protein H. (138 aa)
	Daro_3356	Fimbrial protein pilin:Bacterial general secretion pathway protein H; Belongs to the N-Me-Phe pilin family. (137 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daro_0020	Daro_0210	Peptidoglycan-binding LysM.	Type IV pilus assembly protein PilM.	0.927
Daro_0020	Daro_0211	Peptidoglycan-binding LysM.	Fimbrial assembly.	0.927
Daro_0020	Daro_0212	Peptidoglycan-binding LysM.	Pilus assembly protein, PilO.	0.927
Daro_0020	Daro_0213	Peptidoglycan-binding LysM.	Pilus assembly protein, PilQ.	0.849
Daro_0020	Daro_0214	Peptidoglycan-binding LysM.	Type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal.	0.971
Daro_0020	Daro_0866	Peptidoglycan-binding LysM.	Conserved hypothetical protein.	0.750
Daro_0020	Daro_3036	Peptidoglycan-binding LysM.	Putative Tfp pilus assembly protein tip-associated adhesin PilY1.	0.726
Daro_0020	Daro_3038	Peptidoglycan-binding LysM.	Hypothetical protein.	0.449
Daro_0020	Daro_3039	Peptidoglycan-binding LysM.	Hypothetical protein.	0.437
Daro_0020	Daro_3040	Peptidoglycan-binding LysM.	General secretion pathway protein H.	0.682
Daro_0020	Daro_3041	Peptidoglycan-binding LysM.	General secretion pathway protein H.	0.647
Daro_0020	Daro_3356	Peptidoglycan-binding LysM.	Fimbrial protein pilin:Bacterial general secretion pathway protein H; Belongs to the N-Me-Phe pilin family.	0.605
Daro_0210	Daro_0020	Type IV pilus assembly protein PilM.	Peptidoglycan-binding LysM.	0.927
Daro_0210	Daro_0211	Type IV pilus assembly protein PilM.	Fimbrial assembly.	0.998
Daro_0210	Daro_0212	Type IV pilus assembly protein PilM.	Pilus assembly protein, PilO.	0.993
Daro_0210	Daro_0213	Type IV pilus assembly protein PilM.	Pilus assembly protein, PilQ.	0.980
Daro_0210	Daro_0214	Type IV pilus assembly protein PilM.	Type II and III secretion system protein:NolW-like:Secretin/TonB, short N-terminal.	0.985
Daro_0210	Daro_0866	Type IV pilus assembly protein PilM.	Conserved hypothetical protein.	0.746
Daro_0210	Daro_3036	Type IV pilus assembly protein PilM.	Putative Tfp pilus assembly protein tip-associated adhesin PilY1.	0.767
Daro_0210	Daro_3038	Type IV pilus assembly protein PilM.	Hypothetical protein.	0.530