STRINGSTRING
Daro_0464 Daro_0464 pal pal Daro_0854 Daro_0854 Daro_1201 Daro_1201 Daro_1228 Daro_1228 Daro_1320 Daro_1320 Daro_1898 Daro_1898 Daro_1899 Daro_1899 Daro_1991 Daro_1991 Daro_1992 Daro_1992 queF queF pal-2 pal-2 queG queG rlpA-2 rlpA-2 Daro_3220 Daro_3220 Daro_3276 Daro_3276 queA queA tgt tgt Daro_3597 Daro_3597 Daro_3598 Daro_3598 Daro_3600 Daro_3600 pal-3 pal-3 queC queC Daro_4049 Daro_4049 queE queE cpoB cpoB pal-4 pal-4 tolB tolB Daro_4054 Daro_4054 Daro_4055 Daro_4055 tolQ tolQ Daro_4057 Daro_4057 Daro_4058 Daro_4058 Daro_4059 Daro_4059 ruvB ruvB Daro_4061 Daro_4061 ruvA ruvA ruvC ruvC Daro_4064 Daro_4064 Daro_4065 Daro_4065 Daro_4066 Daro_4066 Daro_4067 Daro_4067 Daro_4068 Daro_4068 Daro_4069 Daro_4069
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Daro_0464OmpA/MotB. (217 aa)
palOmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (165 aa)
Daro_08546-pyruvoyl tetrahydropterin synthase and hypothetical protein. (152 aa)
Daro_1201NLP/P60 protein. (169 aa)
Daro_1228OmpA/MotB. (219 aa)
Daro_1320Peptidoglycan-binding LysM:Lytic transglycosylase, catalytic. (512 aa)
Daro_1898OmpA/MotB. (198 aa)
Daro_1899Conserved hypothetical protein. (147 aa)
Daro_1991Conserved hypothetical protein. (143 aa)
Daro_1992OmpA/MotB. (195 aa)
queFGTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). (283 aa)
pal-2OmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (175 aa)
queG4Fe-4S cluster binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (354 aa)
rlpA-2Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (214 aa)
Daro_3220Lytic transglycosylase, catalytic. (212 aa)
Daro_3276Hypothetical protein. (132 aa)
queAQueuosine biosynthesis protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). (352 aa)
tgttRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...] (369 aa)
Daro_3597OmpA/MotB. (193 aa)
Daro_3598Hypothetical protein. (152 aa)
Daro_3600TIR protein. (462 aa)
pal-3OmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (188 aa)
queCpreQ(0) biosynthesis protein QueC; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. (225 aa)
Daro_4049Conserved hypothetical protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. (120 aa)
queERadical SAM; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. (212 aa)
cpoBConserved hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (243 aa)
pal-4OmpA/MotB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (180 aa)
tolBTolB, N-terminal:WD40-like Beta Propeller; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (437 aa)
Daro_4054Cell division and transport-associated protein TolA; TC 2.C.1.2.1. (278 aa)
Daro_4055Cell division and transport-associated protein TolR; TC 2.C.1.2.1. (135 aa)
tolQCell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (225 aa)
Daro_40574-hydroxybenzoyl-CoA thioesterase. (140 aa)
Daro_4058Conserved hypothetical protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. (277 aa)
Daro_4059Conserved hypothetical protein. (464 aa)
ruvBHolliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (358 aa)
Daro_4061Protein of unknown function UPF0118. (351 aa)
ruvAHolliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (192 aa)
ruvCCrossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (179 aa)
Daro_4064Protein of unknown function DUF6, transmembrane. (283 aa)
Daro_4065Conserved hypothetical protein. (168 aa)
Daro_4066Hypothetical protein. (158 aa)
Daro_4067Protein of unknown function DUF28. (241 aa)
Daro_4068Protein of unknown function DUF853, NPT hydrolase putative. (541 aa)
Daro_4069Hypothetical protein. (222 aa)
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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