Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Daro_0465 | Daro_0847 | Daro_0465 | Daro_0847 | Patatin. | NlpBDapX lipoprotein. | 0.903 |
| Daro_0465 | Daro_1749 | Daro_0465 | Daro_1749 | Patatin. | Peptidase M50, putative membrane-associated zinc metallopeptidase. | 0.796 |
| Daro_0465 | Daro_1751 | Daro_0465 | Daro_1751 | Patatin. | Outer membrane chaperone Skp (OmpH); Belongs to the skp family. | 0.678 |
| Daro_0465 | Daro_2178 | Daro_0465 | Daro_2178 | Patatin. | Putative lipoprotein. | 0.875 |
| Daro_0465 | bamD | Daro_0465 | Daro_1603 | Patatin. | Putative competence lipoprotein precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.875 |
| Daro_0465 | fabZ | Daro_0465 | Daro_1753 | Patatin. | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.456 |
| Daro_0465 | frr | Daro_0465 | Daro_1745 | Patatin. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.560 |
| Daro_0465 | lptA | Daro_0465 | Daro_3421 | Patatin. | OstA-like protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. | 0.471 |
| Daro_0465 | lptD | Daro_0465 | Daro_3659 | Patatin. | Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.525 |
| Daro_0465 | lpxA | Daro_0465 | Daro_1754 | Patatin. | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.508 |
| Daro_0465 | lpxC | Daro_0465 | Daro_3492 | Patatin. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.408 |
| Daro_0465 | lpxD | Daro_0465 | Daro_1752 | Patatin. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.451 |
| Daro_0465 | pyrH | Daro_0465 | Daro_1744 | Patatin. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.618 |
| Daro_0465 | tsf | Daro_0465 | Daro_1743 | Patatin. | Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.665 |
| Daro_0812 | Daro_0813 | Daro_0812 | Daro_0813 | Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal; Belongs to the GST superfamily. | Stringent starvation protein B. | 0.985 |
| Daro_0812 | apaH | Daro_0812 | Daro_3932 | Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal; Belongs to the GST superfamily. | Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.442 |
| Daro_0813 | Daro_0812 | Daro_0813 | Daro_0812 | Stringent starvation protein B. | Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal; Belongs to the GST superfamily. | 0.985 |
| Daro_0813 | Daro_3080 | Daro_0813 | Daro_3080 | Stringent starvation protein B. | Permease YjgP/YjgQ. | 0.465 |
| Daro_0813 | Daro_3081 | Daro_0813 | Daro_3081 | Stringent starvation protein B. | Permease YjgP/YjgQ. | 0.588 |
| Daro_0813 | Daro_3583 | Daro_0813 | Daro_3583 | Stringent starvation protein B. | Fe(II) trafficking protein YggX; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | 0.609 |
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