(43 nodes) Mixed, incl. Protein transmembrane transport, and Tle cognate immunity protein 4, C-terminal domain network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_0387	Conserved hypothetical protein. (152 aa)
	Daro_0388	Hypothetical protein. (83 aa)
	Daro_0389	Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2. (1727 aa)
	Daro_0390	Penicillin-binding protein 1C. (780 aa)
	Daro_0391	Rhs element Vgr protein. (1094 aa)
	Daro_0393	Hypothetical protein. (379 aa)
	Daro_0394	Rhs element Vgr protein. (811 aa)
	Daro_0397	Hypothetical protein. (355 aa)
	Daro_0398	Phospholipase D/Transphosphatidylase. (270 aa)
	Daro_0399	Hypothetical protein. (141 aa)
	Daro_1417	Conserved hypothetical protein. (178 aa)
	Daro_2101	Conserved hypothetical protein. (257 aa)
	Daro_2102	Conserved hypothetical protein. (785 aa)
	Daro_2103	OmpA/MotB. (214 aa)
	Daro_2104	Conserved hypothetical protein. (232 aa)
	Daro_2163	Hypothetical protein. (210 aa)
	Daro_2165	Hypothetical protein. (462 aa)
	Daro_2166	Hypothetical protein. (183 aa)
	Daro_2167	Hypothetical protein. (88 aa)
	Daro_2168	Hypothetical protein. (297 aa)
	Daro_2169	Rhs element Vgr protein. (933 aa)
	Daro_2170	Hypothetical protein. (157 aa)
	Daro_2171	AAA ATPase, central region:Clp, N terminal; Belongs to the ClpA/ClpB family. (899 aa)
	Daro_2172	Protein of unknown function DUF1305. (354 aa)
	Daro_2173	Protein of unknown function DUF879, bacterial. (610 aa)
	Daro_2174	Protein of unknown function DUF1316. (159 aa)
	Daro_2175	Protein of unknown function DUF796. (178 aa)
	Daro_2176	Protein of unknown function DUF877. (494 aa)
	Daro_2177	Uncharacterized conserved protein UCP028301. (170 aa)
	Daro_2179	Putative lipoprotein. (189 aa)
	Daro_2180	Protein of unknown function DUF876, bacterial. (447 aa)
	Daro_2181	Putative membrane protein. (257 aa)
	Daro_2182	Rhs element Vgr protein. (911 aa)
	Daro_2183	Conserved hypothetical protein. (240 aa)
	Daro_2184	Putative transmembrane protein. (146 aa)
	Daro_2185	ImpA, N-terminal. (365 aa)
	Daro_2186	OmpA/MotB. (261 aa)
	Daro_2187	Conserved hypothetical protein. (327 aa)
	Daro_2188	ImcF-related:Protein of unknown function DUF1215. (1270 aa)
	Daro_2189	Hypothetical protein. (473 aa)
	Daro_2190	PAAR protein. (88 aa)
	Daro_2191	Conserved hypothetical protein. (282 aa)
	Daro_2192	Hypothetical protein. (196 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daro_0387	Daro_0388	Conserved hypothetical protein.	Hypothetical protein.	0.531
Daro_0388	Daro_0387	Hypothetical protein.	Conserved hypothetical protein.	0.531
Daro_0388	Daro_0389	Hypothetical protein.	Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2.	0.554
Daro_0388	Daro_0390	Hypothetical protein.	Penicillin-binding protein 1C.	0.554
Daro_0389	Daro_0388	Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2.	Hypothetical protein.	0.554
Daro_0389	Daro_0390	Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2.	Penicillin-binding protein 1C.	0.962
Daro_0389	Daro_0391	Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2.	Rhs element Vgr protein.	0.581
Daro_0389	Daro_0393	Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2.	Hypothetical protein.	0.496
Daro_0389	Daro_0394	Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2.	Rhs element Vgr protein.	0.414
Daro_0389	Daro_2187	Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2.	Conserved hypothetical protein.	0.481
Daro_0390	Daro_0388	Penicillin-binding protein 1C.	Hypothetical protein.	0.554
Daro_0390	Daro_0389	Penicillin-binding protein 1C.	Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2.	0.962
Daro_0390	Daro_0391	Penicillin-binding protein 1C.	Rhs element Vgr protein.	0.557
Daro_0390	Daro_0393	Penicillin-binding protein 1C.	Hypothetical protein.	0.470
Daro_0391	Daro_0389	Rhs element Vgr protein.	Alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal 2.	0.581
Daro_0391	Daro_0390	Rhs element Vgr protein.	Penicillin-binding protein 1C.	0.557
Daro_0391	Daro_0393	Rhs element Vgr protein.	Hypothetical protein.	0.781
Daro_0391	Daro_0394	Rhs element Vgr protein.	Rhs element Vgr protein.	0.444
Daro_0391	Daro_2103	Rhs element Vgr protein.	OmpA/MotB.	0.441
Daro_0391	Daro_2165	Rhs element Vgr protein.	Hypothetical protein.	0.768