(42 nodes) Mostly uncharacterized, incl. Peptidoglycan muralytic activity, and TraU network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_2311	Lytic transglycosylase, catalytic. (183 aa)
	Daro_2312	OmpA/MotB. (225 aa)
	Daro_2313	Hypothetical protein. (116 aa)
	Daro_2314	TraL. (99 aa)
	Daro_2315	Plasmid-like conjugative transfer protein TraE. (188 aa)
	Daro_2316	Conserved hypothetical protein. (291 aa)
	Daro_2317	TraB pilus assembly. (456 aa)
	Daro_2318	Periplasmic thiol:disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (272 aa)
	Daro_2319	Conserved hypothetical protein. (193 aa)
	Daro_2320	Conserved hypothetical protein. (855 aa)
	Daro_2321	Conserved hypothetical protein. (122 aa)
	Daro_2322	Conserved hypothetical protein. (198 aa)
	Daro_2323	Conserved hypothetical protein. (122 aa)
	Daro_2324	Conserved hypothetical protein. (211 aa)
	Daro_2325	TraU. (342 aa)
	Daro_2326	Conserved hypothetical protein. (252 aa)
	Daro_2327	Conserved hypothetical protein. (704 aa)
	Daro_2328	Conserved hypothetical protein. (124 aa)
	Daro_2329	Conserved hypothetical protein. (287 aa)
	Daro_2330	TraH. (482 aa)
	Daro_2331	Hypothetical protein. (923 aa)
	Daro_2644	Lytic transglycosylase, catalytic. (182 aa)
	Daro_2645	OmpA/MotB. (225 aa)
	Daro_2646	Hypothetical protein. (116 aa)
	Daro_2647	TraL. (99 aa)
	Daro_2648	Plasmid-like conjugative transfer protein TraE. (188 aa)
	Daro_2649	Conserved hypothetical protein. (293 aa)
	Daro_2650	TraB pilus assembly. (457 aa)
	Daro_2651	Periplasmic thiol:disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (272 aa)
	Daro_2652	Conserved hypothetical protein. (193 aa)
	Daro_2653	Conserved hypothetical protein. (855 aa)
	Daro_2654	Conserved hypothetical protein. (122 aa)
	Daro_2655	Conserved hypothetical protein. (196 aa)
	Daro_2656	Conserved hypothetical protein. (132 aa)
	Daro_2657	Conserved hypothetical protein. (210 aa)
	Daro_2658	TraU. (342 aa)
	Daro_2659	Conserved hypothetical protein. (252 aa)
	Daro_2660	Conserved hypothetical protein. (706 aa)
	Daro_2661	Conserved hypothetical protein. (124 aa)
	Daro_2662	Conserved hypothetical protein. (288 aa)
	Daro_2663	TraH. (482 aa)
	Daro_2664	Hypothetical protein. (924 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daro_2311	Daro_2312	Lytic transglycosylase, catalytic.	OmpA/MotB.	0.778
Daro_2311	Daro_2313	Lytic transglycosylase, catalytic.	Hypothetical protein.	0.491
Daro_2311	Daro_2314	Lytic transglycosylase, catalytic.	TraL.	0.455
Daro_2311	Daro_2315	Lytic transglycosylase, catalytic.	Plasmid-like conjugative transfer protein TraE.	0.577
Daro_2311	Daro_2316	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.433
Daro_2311	Daro_2317	Lytic transglycosylase, catalytic.	TraB pilus assembly.	0.603
Daro_2311	Daro_2318	Lytic transglycosylase, catalytic.	Periplasmic thiol:disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.	0.571
Daro_2311	Daro_2319	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.432
Daro_2311	Daro_2320	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.602
Daro_2311	Daro_2321	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.410
Daro_2311	Daro_2322	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.523
Daro_2311	Daro_2323	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.403
Daro_2311	Daro_2324	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.583
Daro_2311	Daro_2325	Lytic transglycosylase, catalytic.	TraU.	0.733
Daro_2311	Daro_2326	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.779
Daro_2311	Daro_2327	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.801
Daro_2311	Daro_2328	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.403
Daro_2311	Daro_2329	Lytic transglycosylase, catalytic.	Conserved hypothetical protein.	0.777
Daro_2311	Daro_2330	Lytic transglycosylase, catalytic.	TraH.	0.596
Daro_2311	Daro_2331	Lytic transglycosylase, catalytic.	Hypothetical protein.	0.544