Your Input: | |||||
Daro_0002 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (368 aa) | ||||
Daro_0018 | DNA topoisomerase III. (848 aa) | ||||
priA | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (666 aa) | ||||
Daro_0064 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. (345 aa) | ||||
Daro_0123 | AP endonuclease, family 1:Exodeoxyribonuclease III xth. (259 aa) | ||||
polA | DNA polymerase A; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (906 aa) | ||||
uvrA | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (941 aa) | ||||
Daro_0483 | Single-strand binding protein. (156 aa) | ||||
dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (578 aa) | ||||
Daro_0538 | Methylated-DNA-(protein)-cysteine S-methyltransferase. (162 aa) | ||||
Daro_0542 | DNA polymerase III, delta subunit. (335 aa) | ||||
Daro_0546 | ATP-dependent DNA helicase UvrD. (713 aa) | ||||
Daro_0559 | DNA polymerase III, alpha subunit. (1156 aa) | ||||
dnaX | AAA ATPase, central region; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (537 aa) | ||||
Daro_0807 | Conserved hypothetical protein 103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (107 aa) | ||||
recR | RecR protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (199 aa) | ||||
Daro_0843 | DNA-3-methyladenine glycosylase II. (205 aa) | ||||
Daro_0913 | ATP-dependent DNA helicase RecQ. (617 aa) | ||||
nth | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (210 aa) | ||||
Daro_1220 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (469 aa) | ||||
Daro_1235 | ATP dependent DNA ligase, central. (279 aa) | ||||
Daro_1309 | Hypothetical protein. (574 aa) | ||||
Daro_1381 | DNA polymerase III, epsilon subunit. (204 aa) | ||||
Daro_1384 | Ribonuclease H. (216 aa) | ||||
Daro_1779 | Helicase c2:DEAD/DEAH box helicase, N-terminal. (641 aa) | ||||
Daro_1907 | DNA polymerase III, epsilon subunit. (453 aa) | ||||
Daro_1919 | SMC protein, N-terminal. (1155 aa) | ||||
sbcD | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (414 aa) | ||||
Daro_1937 | Thioesterase superfamily. (136 aa) | ||||
Daro_1938 | Deoxyguanosinetriphosphate triphosphohydrolase. (448 aa) | ||||
lexA | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (201 aa) | ||||
Daro_1940 | SOS cell division inhibitor SulA. (240 aa) | ||||
Daro_1941 | Conserved hypothetical protein. (479 aa) | ||||
dnaE2 | Error-prone DNA polymerase, DnaE-like protein; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1027 aa) | ||||
mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1147 aa) | ||||
radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (453 aa) | ||||
uvrB | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (690 aa) | ||||
uvrC | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (603 aa) | ||||
dinB | UMUC-like DNA-repair protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (387 aa) | ||||
Daro_2194 | TatD-related deoxyribonuclease. (257 aa) | ||||
Daro_2196 | DNA polymerase III, delta prime subunit. (339 aa) | ||||
tmk | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. (204 aa) | ||||
mltG | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. (331 aa) | ||||
Daro_2199 | Glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family. (339 aa) | ||||
Daro_2200 | Protein of unknown function DUF833. (249 aa) | ||||
mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (860 aa) | ||||
Daro_2558 | Putative ATPase involved in DNA repair. (818 aa) | ||||
Daro_2561 | DNA repair exonuclease-like protein. (445 aa) | ||||
Daro_3083 | DNA polymerase III chi subunit, HolC. (140 aa) | ||||
mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (615 aa) | ||||
Daro_3648 | Exodeoxyribonuclease III. (254 aa) | ||||
Daro_3677 | Ribonuclease H. (163 aa) | ||||
mutM | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (277 aa) | ||||
Daro_3870 | SNF2-related:Helicase, C-terminal:SWIM Zn-finger. (1091 aa) | ||||
rep | ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. (663 aa) | ||||
recX | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. (185 aa) | ||||
recA | RecA bacterial DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (343 aa) |