(12 nodes) Mixed, incl. Transporter-associated domain, and AAA domain network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_0235	Hypothetical protein. (119 aa)
	Daro_0236	Hypothetical protein. (140 aa)
	Daro_0238	Integral membrane protein TerC. (252 aa)
	Daro_3215	CBS:Protein of unknown function DUF21:Transporter-associated region. (431 aa)
	Daro_3524	Hypothetical protein. (234 aa)
	Daro_3525	C-5 cytosine-specific DNA methylase. (571 aa)
	Daro_3526	Phage integrase. (559 aa)
	miaB	tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (445 aa)
	Daro_3528	PhoH-like protein. (340 aa)
	ybeY	Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (149 aa)
	Daro_3530	CBS:Transporter-associated region. (282 aa)
	lnt	Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (487 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Daro_0235	Daro_0236	Daro_0235	Daro_0236	Hypothetical protein.	Hypothetical protein.	0.689
Daro_0236	Daro_0235	Daro_0236	Daro_0235	Hypothetical protein.	Hypothetical protein.	0.689
Daro_0238	Daro_3215	Daro_0238	Daro_3215	Integral membrane protein TerC.	CBS:Protein of unknown function DUF21:Transporter-associated region.	0.517
Daro_0238	Daro_3530	Daro_0238	Daro_3530	Integral membrane protein TerC.	CBS:Transporter-associated region.	0.881
Daro_3215	Daro_0238	Daro_3215	Daro_0238	CBS:Protein of unknown function DUF21:Transporter-associated region.	Integral membrane protein TerC.	0.517
Daro_3215	ybeY	Daro_3215	Daro_3529	CBS:Protein of unknown function DUF21:Transporter-associated region.	Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.427
Daro_3524	Daro_3525	Daro_3524	Daro_3525	Hypothetical protein.	C-5 cytosine-specific DNA methylase.	0.594
Daro_3524	Daro_3526	Daro_3524	Daro_3526	Hypothetical protein.	Phage integrase.	0.594
Daro_3525	Daro_3524	Daro_3525	Daro_3524	C-5 cytosine-specific DNA methylase.	Hypothetical protein.	0.594
Daro_3525	Daro_3526	Daro_3525	Daro_3526	C-5 cytosine-specific DNA methylase.	Phage integrase.	0.789
Daro_3525	Daro_3528	Daro_3525	Daro_3528	C-5 cytosine-specific DNA methylase.	PhoH-like protein.	0.438
Daro_3525	Daro_3530	Daro_3525	Daro_3530	C-5 cytosine-specific DNA methylase.	CBS:Transporter-associated region.	0.414
Daro_3525	lnt	Daro_3525	Daro_3531	C-5 cytosine-specific DNA methylase.	Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.	0.414
Daro_3525	miaB	Daro_3525	Daro_3527	C-5 cytosine-specific DNA methylase.	tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	0.438
Daro_3525	ybeY	Daro_3525	Daro_3529	C-5 cytosine-specific DNA methylase.	Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.414
Daro_3526	Daro_3524	Daro_3526	Daro_3524	Phage integrase.	Hypothetical protein.	0.594
Daro_3526	Daro_3525	Daro_3526	Daro_3525	Phage integrase.	C-5 cytosine-specific DNA methylase.	0.789
Daro_3526	Daro_3528	Daro_3526	Daro_3528	Phage integrase.	PhoH-like protein.	0.431
Daro_3526	Daro_3530	Daro_3526	Daro_3530	Phage integrase.	CBS:Transporter-associated region.	0.414
Daro_3526	lnt	Daro_3526	Daro_3531	Phage integrase.	Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.	0.414