(36 nodes) Extracellular region network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_0184	Hemolysin A. (273 aa)
	Daro_0391	Rhs element Vgr protein. (1094 aa)
	Daro_0394	Rhs element Vgr protein. (811 aa)
	Daro_0633	Guanine-specific ribonuclease N1 and T1. (119 aa)
	Daro_0758	Protein of unknown function DUF1078; Belongs to the flagella basal body rod proteins family. (683 aa)
	Daro_0759	Flagellin, N-terminal. (326 aa)
	Daro_0782	Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (452 aa)
	Daro_0784	Flagellin, C-terminal:Flagellin, N-terminal; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (273 aa)
	Daro_1010	Immunoglobulin-like protein. (597 aa)
	Daro_1063	Transcriptional regulator, GntR family. (470 aa)
	Daro_1104	Hypothetical protein. (332 aa)
	Daro_1591	Putative lipase transmembrane protein. (294 aa)
	Daro_1775	Protein of unknown function DUF1555. (305 aa)
	Daro_1854	Serine/threonine protein kinase. (440 aa)
	Daro_1932	Transcriptional regulator, GntR family. (476 aa)
	Daro_2059	Phospholipase/Carboxylesterase. (343 aa)
	Daro_2143	Conserved hypothetical hydrolase/lipase. (336 aa)
	Daro_2169	Rhs element Vgr protein. (933 aa)
	Daro_2175	Protein of unknown function DUF796. (178 aa)
	Daro_2182	Rhs element Vgr protein. (911 aa)
	Daro_2207	TIR protein. (401 aa)
	eno	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (427 aa)
	Daro_2423	Hypothetical protein. (497 aa)
	Daro_2528	Hypothetical protein. (321 aa)
	Daro_2666	Filamentation induced by cAMP protein Fic. (496 aa)
	Daro_2852	Hypothetical protein. (335 aa)
	Daro_3056	Conserved hypothetical protein. (113 aa)
	Daro_3120	Isocitrate dehydrogenase NADP-dependent, monomeric type; Belongs to the monomeric-type IDH family. (745 aa)
	Daro_3257	Uncharacterized protein conserved in bacteria. (288 aa)
	Daro_3317	Xylose isomerase-like TIM barrel; Belongs to the hyi family. (257 aa)
	Daro_3438	Glyoxalase/bleomycin resistance protein/dioxygenase. (131 aa)
	Daro_3600	TIR protein. (462 aa)
	Daro_3609	Rhs element Vgr protein. (574 aa)
	Daro_3653	ATPase. (487 aa)
	Daro_3721	Peptidase M16, C-terminal:Peptidase M16, N-terminal. (429 aa)
	Daro_3955	Filamentation induced by cAMP protein Fic. (384 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daro_0391	Daro_0394	Rhs element Vgr protein.	Rhs element Vgr protein.	0.444
Daro_0391	Daro_2175	Rhs element Vgr protein.	Protein of unknown function DUF796.	0.906
Daro_0394	Daro_0391	Rhs element Vgr protein.	Rhs element Vgr protein.	0.444
Daro_0394	Daro_2175	Rhs element Vgr protein.	Protein of unknown function DUF796.	0.906
Daro_0758	Daro_0759	Protein of unknown function DUF1078; Belongs to the flagella basal body rod proteins family.	Flagellin, N-terminal.	0.997
Daro_0758	Daro_0782	Protein of unknown function DUF1078; Belongs to the flagella basal body rod proteins family.	Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.987
Daro_0758	Daro_0784	Protein of unknown function DUF1078; Belongs to the flagella basal body rod proteins family.	Flagellin, C-terminal:Flagellin, N-terminal; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.968
Daro_0758	Daro_1104	Protein of unknown function DUF1078; Belongs to the flagella basal body rod proteins family.	Hypothetical protein.	0.869
Daro_0759	Daro_0758	Flagellin, N-terminal.	Protein of unknown function DUF1078; Belongs to the flagella basal body rod proteins family.	0.997
Daro_0759	Daro_0782	Flagellin, N-terminal.	Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.987
Daro_0759	Daro_0784	Flagellin, N-terminal.	Flagellin, C-terminal:Flagellin, N-terminal; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.976
Daro_0759	Daro_1104	Flagellin, N-terminal.	Hypothetical protein.	0.804
Daro_0782	Daro_0758	Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Protein of unknown function DUF1078; Belongs to the flagella basal body rod proteins family.	0.987
Daro_0782	Daro_0759	Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellin, N-terminal.	0.987
Daro_0782	Daro_0784	Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellin, C-terminal:Flagellin, N-terminal; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.988
Daro_0784	Daro_0758	Flagellin, C-terminal:Flagellin, N-terminal; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Protein of unknown function DUF1078; Belongs to the flagella basal body rod proteins family.	0.968
Daro_0784	Daro_0759	Flagellin, C-terminal:Flagellin, N-terminal; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin, N-terminal.	0.976
Daro_0784	Daro_0782	Flagellin, C-terminal:Flagellin, N-terminal; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.988
Daro_0784	Daro_1104	Flagellin, C-terminal:Flagellin, N-terminal; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Hypothetical protein.	0.804
Daro_1010	Daro_2423	Immunoglobulin-like protein.	Hypothetical protein.	0.902