STRINGSTRING
Daro_2404 Daro_2404 Daro_2398 Daro_2398 kdsA kdsA Daro_1871 Daro_1871 kdsB kdsB Daro_3296 Daro_3296 Daro_3419 Daro_3419 Daro_3478 Daro_3478 Daro_3480 Daro_3480 Daro_3551 Daro_3551 Daro_3927 Daro_3927 Daro_3928 Daro_3928 Daro_4193 Daro_4193 Daro_0152 Daro_0152 Daro_0157 Daro_0157 Daro_0162 Daro_0162 Daro_0159 Daro_0159 Daro_0178 Daro_0178 Daro_0471 Daro_0471 Daro_1264 Daro_1264 Daro_1270 Daro_1270 Daro_1272 Daro_1272 Daro_1278 Daro_1278 Daro_2759 Daro_2759 Daro_2758 Daro_2758 Daro_2427 Daro_2427 Daro_3000 Daro_3000
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Daro_2404Conserved hypothetical protein. (344 aa)
Daro_2398Lipopolysaccharide biosynthesis. (480 aa)
kdsA2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. (278 aa)
Daro_1871Acyltransferase 3. (397 aa)
kdsB3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (261 aa)
Daro_3296Lipopolysaccharide heptosyltransferase II. (337 aa)
Daro_3419HAD-superfamily hydrolase subfamily IIIA:Phosphatase kdsC. (175 aa)
Daro_3478Conserved hypothetical protein. (506 aa)
Daro_3480Glycosyl transferase, family 2. (336 aa)
Daro_3551Glycosyl transferase, family 39. (547 aa)
Daro_3927Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (419 aa)
Daro_3928Lipopolysaccharide heptosyltransferase I. (317 aa)
Daro_4193Glycosyl transferase, family 2. (252 aa)
Daro_0152Lipopolysaccharide heptosyltransferase III, putative. (367 aa)
Daro_0157Glycosyl transferase, family 9. (382 aa)
Daro_0162Glycosyl transferase, family 9. (319 aa)
Daro_0159Glycosyl transferase, family 9. (381 aa)
Daro_0178Acyltransferase 3. (369 aa)
Daro_0471phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase. (555 aa)
Daro_1264UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase; NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR:3-beta hydroxysteroid dehydrogenase/isomerase:Polysaccharide biosynthesis protein CapD:dTDP-4-dehydrorhamnose reductase. (336 aa)
Daro_1270Glycosyl transferase, family 4. (373 aa)
Daro_1272Hypothetical protein. (400 aa)
Daro_1278NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR:3-beta hydroxysteroid dehydrogenase/isomerase:Polysaccharide biosynthesis protein CapD:dTDP-4-dehydrorhamnose reductase. (617 aa)
Daro_2759Glycosyl transferase, family 2. (362 aa)
Daro_2758Glycosyl transferase, family 39. (534 aa)
Daro_2427Acyltransferase 3. (358 aa)
Daro_3000Conserved hypothetical protein. (540 aa)
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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