(18 nodes) Efflux transmembrane transporter activity network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_3486	Protein of unknown function UPF0118. (375 aa)
	Daro_2628	Outer membrane efflux protein. (432 aa)
	Daro_2620	Outer membrane efflux protein. (432 aa)
	Daro_3919	RND efflux system, outer membrane lipoprotein, NodT. (489 aa)
	Daro_3926	Type I secretion outer membrane protein, TolC. (441 aa)
	Daro_4061	Protein of unknown function UPF0118. (351 aa)
	Daro_2478	Outer membrane efflux protein. (416 aa)
	Daro_2263	Outer membrane efflux protein. (424 aa)
	Daro_2254	Outer membrane efflux protein. (436 aa)
	Daro_3827	RND efflux system, outer membrane lipoprotein, NodT. (504 aa)
	Daro_2162	RND efflux system, outer membrane lipoprotein, NodT. (475 aa)
	Daro_1877	Outer membrane efflux protein. (413 aa)
	Daro_1176	Outer membrane efflux protein. (429 aa)
	Daro_1165	Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. (462 aa)
	Daro_0706	Type I secretion outer membrane protein, TolC. (636 aa)
	Daro_0680	C4-dicarboxylate transporter/malic acid transport protein. (346 aa)
	Daro_0294	Outer membrane efflux protein. (420 aa)
	Daro_2803	Outer membrane efflux protein. (414 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daro_1176	Daro_2254	Outer membrane efflux protein.	Outer membrane efflux protein.	0.761
Daro_1176	Daro_2263	Outer membrane efflux protein.	Outer membrane efflux protein.	0.419
Daro_1176	Daro_2478	Outer membrane efflux protein.	Outer membrane efflux protein.	0.449
Daro_1176	Daro_2628	Outer membrane efflux protein.	Outer membrane efflux protein.	0.755
Daro_1877	Daro_2162	Outer membrane efflux protein.	RND efflux system, outer membrane lipoprotein, NodT.	0.542
Daro_1877	Daro_2263	Outer membrane efflux protein.	Outer membrane efflux protein.	0.422
Daro_2162	Daro_1877	RND efflux system, outer membrane lipoprotein, NodT.	Outer membrane efflux protein.	0.542
Daro_2162	Daro_3926	RND efflux system, outer membrane lipoprotein, NodT.	Type I secretion outer membrane protein, TolC.	0.903
Daro_2254	Daro_1176	Outer membrane efflux protein.	Outer membrane efflux protein.	0.761
Daro_2254	Daro_2263	Outer membrane efflux protein.	Outer membrane efflux protein.	0.520
Daro_2254	Daro_2478	Outer membrane efflux protein.	Outer membrane efflux protein.	0.598
Daro_2263	Daro_1176	Outer membrane efflux protein.	Outer membrane efflux protein.	0.419
Daro_2263	Daro_1877	Outer membrane efflux protein.	Outer membrane efflux protein.	0.422
Daro_2263	Daro_2254	Outer membrane efflux protein.	Outer membrane efflux protein.	0.520
Daro_2263	Daro_2628	Outer membrane efflux protein.	Outer membrane efflux protein.	0.517
Daro_2263	Daro_2803	Outer membrane efflux protein.	Outer membrane efflux protein.	0.431
Daro_2478	Daro_1176	Outer membrane efflux protein.	Outer membrane efflux protein.	0.449
Daro_2478	Daro_2254	Outer membrane efflux protein.	Outer membrane efflux protein.	0.598
Daro_2478	Daro_2628	Outer membrane efflux protein.	Outer membrane efflux protein.	0.579
Daro_2628	Daro_1176	Outer membrane efflux protein.	Outer membrane efflux protein.	0.755