(7 nodes) Respiratory chain complex I network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_0980	Ferredoxin. (235 aa)
	Daro_0961	NADH dehydrogenase subunit M. (494 aa)
	Daro_0567	NADH dehydrogenase subunit M. (503 aa)
	Daro_0955	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (777 aa)
	Daro_0954	NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (442 aa)
	Daro_0953	NADH dehydrogenase subunit E. (157 aa)
	Daro_0564	NADH dehydrogenase subunit M. (481 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daro_0564	Daro_0567	NADH dehydrogenase subunit M.	NADH dehydrogenase subunit M.	0.983
Daro_0564	Daro_0953	NADH dehydrogenase subunit M.	NADH dehydrogenase subunit E.	0.945
Daro_0564	Daro_0954	NADH dehydrogenase subunit M.	NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.914
Daro_0564	Daro_0955	NADH dehydrogenase subunit M.	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.897
Daro_0564	Daro_0980	NADH dehydrogenase subunit M.	Ferredoxin.	0.897
Daro_0567	Daro_0564	NADH dehydrogenase subunit M.	NADH dehydrogenase subunit M.	0.983
Daro_0567	Daro_0953	NADH dehydrogenase subunit M.	NADH dehydrogenase subunit E.	0.945
Daro_0567	Daro_0954	NADH dehydrogenase subunit M.	NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.914
Daro_0567	Daro_0955	NADH dehydrogenase subunit M.	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.897
Daro_0567	Daro_0980	NADH dehydrogenase subunit M.	Ferredoxin.	0.897
Daro_0953	Daro_0564	NADH dehydrogenase subunit E.	NADH dehydrogenase subunit M.	0.945
Daro_0953	Daro_0567	NADH dehydrogenase subunit E.	NADH dehydrogenase subunit M.	0.945
Daro_0953	Daro_0954	NADH dehydrogenase subunit E.	NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.999
Daro_0953	Daro_0955	NADH dehydrogenase subunit E.	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.999
Daro_0953	Daro_0961	NADH dehydrogenase subunit E.	NADH dehydrogenase subunit M.	0.997
Daro_0953	Daro_0980	NADH dehydrogenase subunit E.	Ferredoxin.	0.995
Daro_0954	Daro_0564	NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	NADH dehydrogenase subunit M.	0.914
Daro_0954	Daro_0567	NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	NADH dehydrogenase subunit M.	0.914
Daro_0954	Daro_0953	NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	NADH dehydrogenase subunit E.	0.999
Daro_0954	Daro_0955	NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	NADH dehydrogenase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.999