(32 nodes) RmlC-like jelly roll fold network (Dechloromonas aromatica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Daro_0531	Hypothetical protein. (92 aa)
	ackA-3	Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (772 aa)
	Daro_4089	Hypothetical protein. (191 aa)
	Daro_3904	Sulfate permease, SulP family; Cyclic nucleotide-binding:Sulfate transporter/antisigma-factor antagonist STAS:Xanthine/uracil/vitamin C permease:Sulphate transporter. (736 aa)
	Daro_3649	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp. (222 aa)
	Daro_3569	Hypothetical protein. (146 aa)
	Daro_3546	Cyclic nucleotide-binding protein. (124 aa)
	Daro_3322	Cyclic nucleotide-binding protein. (495 aa)
	Daro_3198	Transcriptional regulator, Crp/Fnr family. (231 aa)
	ppnP	Protein of unknown function DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. (103 aa)
	Daro_2588	Cupin region. (123 aa)
	Daro_2846	Conserved hypothetical protein. (109 aa)
	Daro_0042	Protein of unknown function DUF861. (120 aa)
	Daro_0248	Cyclic nucleotide-binding protein. (224 aa)
	Daro_0553	Pirin, N-terminal; Belongs to the pirin family. (235 aa)
	Daro_0560	Hypothetical protein. (159 aa)
	Daro_0925	Cyclic nucleotide-binding:Protein kinase. (454 aa)
	Daro_1036	Cyclic nucleotide-binding protein. (245 aa)
	Daro_1047	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp. (247 aa)
	Daro_1089	Transcriptional regulator, Crp/Fnr family. (218 aa)
	Daro_1239	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (177 aa)
	Daro_1258	dTDP-4-dehydrorhamnose epimerase. (158 aa)
	Daro_1294	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp. (220 aa)
	Daro_1347	Conserved hypothetical protein. (176 aa)
	Daro_1390	Pirin, N-terminal:Pirin, C-terminal; Belongs to the pirin family. (304 aa)
	Daro_1635	Cyclic nucleotide-binding:CBS:Protein of unknown function DUF294, nucleotidyltransferase putative. (646 aa)
	Daro_1669	Transcriptional regulator, Crp/Fnr family. (233 aa)
	Daro_1886	Transcriptional regulator, AraC family. (273 aa)
	Daro_1904	Cupin region. (120 aa)
	Daro_2043	Cyclic nucleotide-binding protein. (439 aa)
	Daro_2075	Cupin region. (135 aa)
	Daro_2389	Mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP). (479 aa)

Your Current Organism:

Dechloromonas aromatica

NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daro_0248	Daro_1036	Cyclic nucleotide-binding protein.	Cyclic nucleotide-binding protein.	0.464
Daro_0248	Daro_1089	Cyclic nucleotide-binding protein.	Transcriptional regulator, Crp/Fnr family.	0.537
Daro_0248	Daro_1294	Cyclic nucleotide-binding protein.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.927
Daro_0248	Daro_3546	Cyclic nucleotide-binding protein.	Cyclic nucleotide-binding protein.	0.926
Daro_1036	Daro_0248	Cyclic nucleotide-binding protein.	Cyclic nucleotide-binding protein.	0.464
Daro_1036	Daro_1047	Cyclic nucleotide-binding protein.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.525
Daro_1036	Daro_1089	Cyclic nucleotide-binding protein.	Transcriptional regulator, Crp/Fnr family.	0.638
Daro_1036	Daro_3649	Cyclic nucleotide-binding protein.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.484
Daro_1047	Daro_1036	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Cyclic nucleotide-binding protein.	0.525
Daro_1047	Daro_1669	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Transcriptional regulator, Crp/Fnr family.	0.450
Daro_1047	Daro_3198	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Transcriptional regulator, Crp/Fnr family.	0.492
Daro_1089	Daro_0248	Transcriptional regulator, Crp/Fnr family.	Cyclic nucleotide-binding protein.	0.537
Daro_1089	Daro_1036	Transcriptional regulator, Crp/Fnr family.	Cyclic nucleotide-binding protein.	0.638
Daro_1089	Daro_1294	Transcriptional regulator, Crp/Fnr family.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.741
Daro_1089	Daro_1669	Transcriptional regulator, Crp/Fnr family.	Transcriptional regulator, Crp/Fnr family.	0.538
Daro_1089	Daro_3198	Transcriptional regulator, Crp/Fnr family.	Transcriptional regulator, Crp/Fnr family.	0.673
Daro_1089	Daro_3649	Transcriptional regulator, Crp/Fnr family.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.415
Daro_1239	Daro_1258	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	dTDP-4-dehydrorhamnose epimerase.	0.900
Daro_1239	Daro_2389	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP).	0.737
Daro_1258	Daro_1239	dTDP-4-dehydrorhamnose epimerase.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.900