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| | nfo | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (278 aa) |
| | SDY22389.1 | Hypothetical protein. (137 aa) |
| | SDY23567.1 | ADP-ribosylglycohydrolase. (468 aa) |
| | SDY24181.1 | L-ascorbate metabolism protein UlaG, beta-lactamase superfamily. (248 aa) |
| | SDY24517.1 | methylated-DNA-[protein]-cysteine S-methyltransferase. (179 aa) |
| | nth | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (223 aa) |
| | SDY22522.1 | sigma-B regulation protein RsbU (phosphoserine phosphatase). (381 aa) |
| | SDY24737.1 | Uridine kinase. (557 aa) |
| | SDY25302.1 | sigma-B regulation protein RsbU (phosphoserine phosphatase). (406 aa) |
| | SDY25333.1 | Metallo-beta-lactamase family protein. (543 aa) |
| | leuA | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (508 aa) |
| | SDY43308.1 | Hippurate hydrolase. (396 aa) |
| | SDY40294.1 | Nicotinic acid mononucleotide adenylyltransferase. (1632 aa) |
| | SDY43814.1 | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (295 aa) |
| | SDY43848.1 | Magnesium transporter; Acts as a magnesium transporter. (455 aa) |
| | SDY44008.1 | Hypothetical protein. (277 aa) |
| | SDY40388.1 | Hypothetical protein. (977 aa) |
| | rpsD | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (199 aa) |
| | SDY44724.1 | Small redox-active disulfide protein 2. (78 aa) |
| | SDY40473.1 | NAD-dependent deacetylase. (246 aa) |
| | argB | N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (286 aa) |
| | argC | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (345 aa) |
| | hemA | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (434 aa) |
| | SDY27539.1 | Magnesium transporter; Acts as a magnesium transporter. (452 aa) |
| | SDY28675.1 | Serine/threonine protein kinase. (658 aa) |
| | hutG | Formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family. (339 aa) |
| | bioB | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (318 aa) |
| | SDY29680.1 | Urocanate reductase. (591 aa) |
| | recO | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (246 aa) |
| | SDY30589.1 | Diacylglycerol kinase (ATP). (233 aa) |
| | ybeY | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (152 aa) |
| | rpsU | Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (60 aa) |
| | rpsT | Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa) |
| | SDY23176.1 | Fructokinase; Belongs to the carbohydrate kinase PfkB family. (315 aa) |
| | SDY31488.1 | Tetratricopeptide repeat-containing protein. (435 aa) |
| | SDY31790.1 | Cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (292 aa) |
| | SDY23266.1 | Aspartate aminotransferase. (355 aa) |
| | rplT | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa) |
| | rpmI | LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. (62 aa) |
| | SDY23399.1 | O-acetylhomoserine sulfhydrylase. (426 aa) |
| | SDY45945.1 | Rubrerythrin. (149 aa) |
| | SDY47943.1 | Rubrerythrin. (164 aa) |
| | SDY40788.1 | Rubrerythrin. (168 aa) |
| | SDY48999.1 | Membrane associated serine protease, rhomboid family. (245 aa) |
| | SDY49029.1 | Amidohydrolase; Belongs to the peptidase M20A family. (395 aa) |
| | SDY49057.1 | Esterase/lipase superfamily enzyme. (255 aa) |
| | SDY49468.1 | Magnesium transporter; Acts as a magnesium transporter. (456 aa) |
| | SDY40050.1 | Hypothetical protein. (378 aa) |
| | SDY40884.1 | FMN-binding domain-containing protein. (128 aa) |
| | SDY49598.1 | Hypothetical protein. (168 aa) |
| | SDY49661.1 | Cupin domain-containing protein. (110 aa) |
| | SDY33329.1 | Pyruvate dehydrogenase E1 component beta subunit. (323 aa) |
| | SDY49698.1 | Cupin domain protein. (112 aa) |
| | SDY49908.1 | N-glycosylase/DNA lyase. (299 aa) |
| | SDY50305.1 | Arginase; Belongs to the arginase family. (301 aa) |
| | rnhA | RNase HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (154 aa) |
| | SDY52009.1 | NTE family protein. (411 aa) |
| | SDY41260.1 | RNA-binding protein YlmH, contains S4-like domain. (260 aa) |
| | SDY41433.1 | Peroxiredoxin Q/BCP. (95 aa) |
| | SDY41469.1 | Peroxiredoxin Q/BCP. (45 aa) |
| | SDY42201.1 | Putative phosphotransacetylase; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (191 aa) |
| | SDY42262.1 | ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (181 aa) |
| | SDY42358.1 | Predicted DNA-binding protein, UPF0251 family; Belongs to the UPF0251 family. (116 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (618 aa) |
| | SDY42892.1 | NADPH2:quinone reductase. (332 aa) |
| | SDY60682.1 | Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase. (392 aa) |
| | SDY60824.1 | Hypothetical protein. (1166 aa) |
| | hpf | Putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (178 aa) |
| | ychF | Hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (362 aa) |
| | SDY61778.1 | N-acetylglutamate synthase, GNAT family. (293 aa) |
| | SDY62769.1 | D-proline reductase (dithiol) PrdA/D-proline reductase (dithiol) PrdD. (254 aa) |
| | SDY58201.1 | methylmalonyl-CoA mutase. (558 aa) |
| | SDY63663.1 | dCMP deaminase. (152 aa) |
| | rpmE | LSU ribosomal protein L31P; Binds the 23S rRNA. (65 aa) |
| | SDY64088.1 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. (492 aa) |
| | SDY64295.1 | Predicted N-acetyltransferase YhbS. (189 aa) |
| | SDY64377.1 | 2-iminobutanoate/2-iminopropanoate deaminase. (128 aa) |
| | SDY64597.1 | Amidohydrolase. (406 aa) |
| | fhs | Formate-tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (558 aa) |
| | SDY64936.1 | Aspartate aminotransferase. (381 aa) |
| | SDY65068.1 | Stage II sporulation protein E (SpoIIE). (390 aa) |
| | SDY65194.1 | Ornithine cyclodeaminase. (325 aa) |
| | SDY65507.1 | Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase. (414 aa) |
| | SDY65534.1 | L-fuculose 1-phosphate aldolase. (214 aa) |
| | SDY58527.1 | Cupin domain protein. (115 aa) |
| | topB | DNA topoisomerase-3; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (747 aa) |
| | SDY66555.1 | Amidohydrolase. (392 aa) |
| | SDY66909.1 | Fumarate reductase flavoprotein subunit. (126 aa) |
| | SDY67012.1 | Ethanolamine utilization protein EutQ. (150 aa) |
| | SDY67094.1 | Carboxysome shell and ethanolamine utilization microcompartment protein CcmL/EutN. (186 aa) |
| | SDY67148.1 | Ethanolamine utilization protein EutN. (103 aa) |
| | SDY67203.1 | Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (215 aa) |
| | SDY67232.1 | Ethanolamine utilization cobalamin adenosyltransferase. (262 aa) |
| | SDY67260.1 | Ethanolamine utilization protein EutM. (96 aa) |
| | SDY67324.1 | Carboxysome shell and ethanolamine utilization microcompartment protein CcmL/EutN. (187 aa) |
| | SDY67349.1 | Ethanolamine utilization protein EutL. (217 aa) |
| | eutC | Ethanolamine ammonia-lyase light chain; Belongs to the EutC family. (298 aa) |
| | SDY67438.1 | Ethanolamine utilization protein EutA. (478 aa) |
| | SDY67526.1 | Ethanolamine utilization protein EutP; Belongs to the EutP/PduV family. (140 aa) |
| | SDY67557.1 | Ethanolamine utilization protein EutS. (115 aa) |
| | SDY57690.1 | tRNA-U20-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (323 aa) |
| | ispE | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (290 aa) |
| | SDY57752.1 | 3-hydroxyacyl-CoA dehydrogenase. (284 aa) |
| | SDY59375.1 | Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily. (435 aa) |
| | purD | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. (417 aa) |
| | purF | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (480 aa) |
| | guaB | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (486 aa) |
| | SDY60145.1 | Dihydropyrimidinase. (455 aa) |
| | SDY75009.1 | FMN-binding domain-containing protein. (126 aa) |
| | SDY75070.1 | Predicted DNA-binding protein, UPF0251 family; Belongs to the UPF0251 family. (121 aa) |
| | SDY75312.1 | Two-component system, chemotaxis family, response regulator CheY. (114 aa) |
| | SDY75431.1 | Pheromone shutdown-related protein TraB. (421 aa) |
| | SDY75526.1 | Glutamate carboxypeptidase. (376 aa) |
| | SDY75785.1 | DNA-binding transcriptional activator of the SARP family. (975 aa) |
| | SDY76049.1 | Predicted ATPase. (1038 aa) |
| | SDY76136.1 | Glutamate formiminotransferase. (301 aa) |
| | SDY76172.1 | Formimidoyltetrahydrofolate cyclodeaminase. (206 aa) |
| | SDY76488.1 | Amidohydrolase. (395 aa) |
| | SDY77524.1 | Amidase. (297 aa) |
| | SDY77580.1 | DNA gyrase subunit B. (658 aa) |
| | SDY77823.1 | Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase. (408 aa) |
| | SDY77939.1 | Nitrogen regulatory protein PII. (220 aa) |
| | SDY78384.1 | PRC-barrel domain-containing protein. (273 aa) |
| | SDY78499.1 | Small redox-active disulfide protein 2. (77 aa) |
| | SDY78630.1 | Hypothetical protein. (114 aa) |
| | SDY78666.1 | Uncharacterized protein, linocin/CFP29 family. (264 aa) |
| | SDY79278.1 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (412 aa) |
| | pheA | Prephenate dehydratase/chorismate mutase / prephenate dehydratase. (274 aa) |
| | SDY80386.1 | DNA-binding transcriptional activator of the SARP family. (420 aa) |
| | SDY80444.1 | Ubiquinone biosynthesis protein. (530 aa) |
| | cobB | NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily. (246 aa) |
| | SDY73027.1 | tRNA A37 threonylcarbamoyladenosine dehydratase. (273 aa) |
| | rpsF | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. (95 aa) |
| | rpsR | SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (76 aa) |
| | SDY73638.1 | Large subunit ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (214 aa) |
| | SDY74868.1 | Ribosomal protein S18 acetylase RimI. (162 aa) |
| | SDY87826.1 | Putative ATPase. (441 aa) |
| | iscS | Cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. (391 aa) |
| | SDY88092.1 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (143 aa) |
| | SDY88485.1 | nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs. (321 aa) |
| | SDY89198.1 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. (295 aa) |
| | SDY89349.1 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. (558 aa) |
| | SDY89838.1 | SSU ribosomal protein S1P. (376 aa) |
| | SDY85513.1 | Cysteine desulfurase. (386 aa) |
| | rpsO | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (87 aa) |
| | SDY90510.1 | Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. (317 aa) |
| | SDY90558.1 | Phosphoesterase RecJ domain-containing protein. (322 aa) |
| | SDY90632.1 | Ribosomal protein L7Ae. (106 aa) |
| | rpsB | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. (236 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (698 aa) |
| | SDY91963.1 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (281 aa) |
| | rplS | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (153 aa) |
| | rpsP | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (81 aa) |
| | smc | Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1193 aa) |
| | rpmF | Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (59 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (397 aa) |
| | priA | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (775 aa) |
| | SDY93050.1 | Hypothetical protein. (606 aa) |
| | SDY86264.1 | DNA replication and repair protein RadC; Belongs to the UPF0758 family. (236 aa) |
| | rplU | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | rpmA | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. (99 aa) |
| | nadD | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (207 aa) |
| | SDY86800.1 | 2-iminobutanoate/2-iminopropanoate deaminase. (126 aa) |
| | SDY87260.1 | Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily. (169 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (149 aa) |
| | SDY87516.1 | Succinyl-diaminopimelate desuccinylase. (405 aa) |
| | SDY98639.1 | Sulfotransferase family protein. (254 aa) |
| | SDY98748.1 | Sulfotransferase domain-containing protein. (256 aa) |
| | SDY99198.1 | O-Antigen ligase. (691 aa) |
| | SDY99935.1 | S1 RNA binding domain protein. (137 aa) |
| | SDZ00009.1 | DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. (92 aa) |
| | SDZ01123.1 | Sirohydrochlorin cobaltochelatase. (123 aa) |
| | SDY95948.1 | Fumarate reductase flavoprotein subunit. (645 aa) |
| | SDY96976.1 | Signal transduction histidine kinase. (348 aa) |
| | selO | Uncharacterized conserved protein YdiU, UPF0061 family; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (498 aa) |
| | SDY97122.1 | L-ascorbate metabolism protein UlaG, beta-lactamase superfamily. (260 aa) |
| | SDY97168.1 | Amidohydrolase. (397 aa) |
| | SDY97223.1 | Aminobenzoyl-glutamate utilization protein A. (422 aa) |
| | SDY97295.1 | Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (348 aa) |
| | SDY96072.1 | Fumarate reductase flavoprotein subunit. (602 aa) |
| | SDY97814.1 | cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (168 aa) |
| | SDY97984.1 | Fructokinase; Belongs to the carbohydrate kinase PfkB family. (324 aa) |
| | lcdH | Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. (321 aa) |
| | udk | Uridine kinase. (205 aa) |
| | SDZ03547.1 | Hypothetical protein. (277 aa) |
| | SDZ04074.1 | CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family. (395 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (371 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (639 aa) |
| | SDZ08957.1 | Glutamate formiminotransferase/formiminotetrahydrofolate cyclodeaminase. (302 aa) |
| | SDZ08980.1 | Dihydropyrimidinase/allantoinase. (482 aa) |
| | ubiX | 4-hydroxy-3-polyprenylbenzoate decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (185 aa) |
| | SDZ09064.1 | BMC domain-containing protein. (90 aa) |
| | SDZ09104.1 | BMC domain-containing protein. (115 aa) |
| | SDZ09125.1 | BMC domain-containing protein. (92 aa) |
| | SDZ09169.1 | Ethanolamine utilization protein EutN. (92 aa) |
| | SDZ09511.1 | ATP-dependent RNA helicase DeaD. (457 aa) |
| | SDZ07900.1 | Thioredoxin 1; Belongs to the thioredoxin family. (105 aa) |
| | tadA | tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (169 aa) |
| | SDZ08237.1 | Serine/threonine protein kinase. (590 aa) |
| | pdxS | Pyridoxal phosphate synthase yaaD subunit; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (288 aa) |
| | SDZ08284.1 | Serine/threonine protein kinase. (525 aa) |
| | SDZ08675.1 | Cysteine desulfurase family protein. (381 aa) |
| | SDZ13063.1 | Phosphoribosyl 1,2-cyclic phosphodiesterase. (264 aa) |
| | SDZ13181.1 | DnaD and phage-associated domain-containing protein. (377 aa) |
| | SDZ13199.1 | DNA replication protein DnaC. (328 aa) |
| | SDZ13254.1 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (445 aa) |
| | recR | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (199 aa) |
| | SDZ13368.1 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (115 aa) |
| | SDZ13458.1 | Protein of unknown function. (173 aa) |
| | SDZ13496.1 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. (294 aa) |
| | sbcD | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (386 aa) |
| | SDZ11813.1 | Site-specific DNA-methyltransferase (adenine-specific); Belongs to the N(4)/N(6)-methyltransferase family. (337 aa) |
| | SDZ12200.1 | Iron-only hydrogenase maturation protein HydE. (349 aa) |
| | SDZ12451.1 | Hypothetical protein; Belongs to the pirin family. (292 aa) |
| | lysA | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (432 aa) |
| | SDZ12762.1 | 2-dehydro-3-deoxygluconokinase. (340 aa) |
| | SDZ12830.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridinediphosphokinase. (162 aa) |
| | SDZ16584.1 | Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (326 aa) |
| | SDZ16608.1 | Peptide/nickel transport system ATP-binding protein/oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (320 aa) |
| | SDZ14982.1 | Amidohydrolase. (372 aa) |
| | SDZ15338.1 | HD superfamily phosphohydrolase. (645 aa) |
| | SDZ15390.1 | hypoxanthine-DNA glycosylase. (186 aa) |
| | SDZ15409.1 | Acetyltransferase (GNAT) family protein. (255 aa) |
| | SDZ15568.1 | Glycerol 2-dehydrogenase (NAD+). (368 aa) |
| | SDZ15708.1 | Protoporphyrinogen oxidase. (417 aa) |
| | SDZ15989.1 | Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (310 aa) |
| | SDZ14780.1 | Nickel transport system ATP-binding protein. (283 aa) |
| | SDZ16230.1 | Restriction endonuclease. (320 aa) |
| | rplP | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (147 aa) |
| | rpmC | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. (65 aa) |
| | rpsQ | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (84 aa) |
| | rplN | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (103 aa) |
| | rplE | Large subunit ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa) |
| | rpsZ | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rpsH | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplF | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (179 aa) |
| | rplR | Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (122 aa) |
| | rpsJ | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (104 aa) |
| | rpsE | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (168 aa) |
| | rpmD | LSU ribosomal protein L30P. (59 aa) |
| | rplO | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (147 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (217 aa) |
| | SDZ18351.1 | Hypothetical protein. (94 aa) |
| | rpsM | Small subunit ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (122 aa) |
| | rpsK | Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (132 aa) |
| | rplC | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (211 aa) |
| | rpsD-2 | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (207 aa) |
| | rplQ | LSU ribosomal protein L17P. (113 aa) |
| | truA | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (253 aa) |
| | rplM | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa) |
| | rpsI | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | rplD | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. (207 aa) |
| | rplW | Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (96 aa) |
| | SDZ18973.1 | Hypothetical protein. (281 aa) |
| | rplB | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa) |
| | SDZ19109.1 | HNH endonuclease. (105 aa) |
| | rpsS | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (93 aa) |
| | rplV | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (115 aa) |
| | rpsC | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (228 aa) |
| | SDZ20898.1 | Nitrogenase iron protein NifH; Belongs to the NifH/BchL/ChlL family. (267 aa) |
| | SDZ20589.1 | Amidohydrolase. (366 aa) |
| | mcsB | Protein arginine kinase; Catalyzes the specific phosphorylation of arginine residues in proteins; Belongs to the ATP:guanido phosphotransferase family. (341 aa) |
| | mrnC | Ribonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (153 aa) |
| | rplA | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (231 aa) |
| | rplK | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa) |
| | rpmG | LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | rpsG | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsL | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (138 aa) |
| | rplL | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (122 aa) |
| | rplJ | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (165 aa) |
| | SDZ24253.1 | Hypothetical protein. (302 aa) |
| | SDZ24277.1 | Phage DNA replication protein (predicted replicative helicase loader). (277 aa) |
| | SDY33359.1 | Pyruvate dehydrogenase E1 component alpha subunit. (327 aa) |
| | SDY33868.1 | succinyl-CoA:acetate CoA-transferase. (495 aa) |
