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AJZ75101.1 AJZ75101.1 rps10 rps10 AJZ75274.1 AJZ75274.1 AJZ75283.1 AJZ75283.1 rps8 rps8 AJZ75371.1 AJZ75371.1 rpl5 rpl5 AJZ75373.1 AJZ75373.1 rpl24 rpl24 AJZ75376.1 AJZ75376.1 rpl29 rpl29 rps3 rps3 rpl22 rpl22 rps19p rps19p rpl23 rpl23 AJZ75384.1 AJZ75384.1 fusA fusA AJZ75577.1 AJZ75577.1 AJZ76619.1 AJZ76619.1 AJZ75649.1 AJZ75649.1 AJZ76621.1 AJZ76621.1 rpl13 rpl13 AJZ75656.1 AJZ75656.1 rpl15 rpl15 rpl30 rpl30 AJZ75677.1 AJZ75677.1 rpl18 rpl18 AJZ75683.1 AJZ75683.1 rpl19e rpl19e rpl11 rpl11 rpl1 rpl1 rpl10 rpl10 rpl12p rpl12p rps7 rps7 rps12 rps12 AJZ75702.1 AJZ75702.1 rps13 rps13 rps4 rps4 rps2 rps2 rpl44e rpl44e rps19e rps19e rps6e rps6e rpl2p rpl2p rpl7ae rpl7ae rps28e rps28e rpl24e rpl24e rps3ae rps3ae rps15 rps15 rps11 rps11 AJZ76395.1 AJZ76395.1 rpl21e rpl21e rpl31e rpl31e AJZ76506.1 AJZ76506.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AJZ75101.150S ribosomal protein L40; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL40 family. (55 aa)
rps1030S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
AJZ75274.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
AJZ75283.130S ribosomal protein S26; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
rps830S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
AJZ75371.130S ribosomal protein S14; Derived by automated computational analysis using gene prediction method: Protein Homology. (59 aa)
rpl550S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (172 aa)
AJZ75373.130S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
rpl2450S ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. (164 aa)
AJZ75376.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
rpl2950S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family. (67 aa)
rps330S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (245 aa)
rpl2250S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (152 aa)
rps19p30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (131 aa)
rpl2350S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (88 aa)
AJZ75384.150S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (330 aa)
fusAElongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. (730 aa)
AJZ75577.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
AJZ76619.150S ribosomal protein L10e; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
AJZ75649.150S ribosomal protein L37; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
AJZ76621.150S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa)
rpl1350S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (146 aa)
AJZ75656.130S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. (148 aa)
rpl1550S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (140 aa)
rpl3050S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
AJZ75677.130S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS5 family. (233 aa)
rpl1850S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (160 aa)
AJZ75683.150S ribosomal protein L32e; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
rpl19e50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (153 aa)
rpl1150S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (160 aa)
rpl150S ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (218 aa)
rpl1050S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (288 aa)
rpl12p50S ribosomal protein L12; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (99 aa)
rps730S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (199 aa)
rps1230S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (145 aa)
AJZ75702.150S ribosomal protein L7ae; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
rps1330S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (202 aa)
rps430S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (180 aa)
rps230S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family. (207 aa)
rpl44e50S ribosomal protein L44; Binds to the 23S rRNA. (92 aa)
rps19e30S ribosomal protein S19; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (150 aa)
rps6e30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS6 family. (126 aa)
rpl2p50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (243 aa)
rpl7ae50S ribosomal protein L7; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (125 aa)
rps28e30S ribosomal protein S28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS28 family. (71 aa)
rpl24e50S ribosomal protein L24; Binds to the 23S rRNA. (66 aa)
rps3ae30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family. (204 aa)
rps1530S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
rps1130S ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (132 aa)
AJZ76395.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
rpl21e50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL21 family. (100 aa)
rpl31eHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribosomal protein L31e family. (156 aa)
AJZ76506.150S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
Your Current Organism:
Nitrosotenuis cloacae
NCBI taxonomy Id: 1603555
Other names: C. Nitrosotenuis cloacae, Candidatus Nitrosotenuis cloacae, Thaumarchaeota archaeon SAT1
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