STRINGSTRING
rps10 rps10 AJZ75274.1 AJZ75274.1 rpl5 rpl5 AJZ75373.1 AJZ75373.1 rpl24 rpl24 AJZ75376.1 AJZ75376.1 rpl29 rpl29 rps3 rps3 rps19p rps19p rpl23 rpl23 AJZ75577.1 AJZ75577.1 rpl30 rpl30 rpl18 rpl18 AJZ75683.1 AJZ75683.1 rpl19e rpl19e rps7 rps7 rps12 rps12 AJZ75702.1 AJZ75702.1 rps4 rps4 rps2 rps2 rps6e rps6e rpl7ae rpl7ae rps28e rps28e rpl24e rpl24e rps3ae rps3ae rps15 rps15 AJZ76395.1 AJZ76395.1 AJZ76506.1 AJZ76506.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps1030S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
AJZ75274.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
rpl550S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (172 aa)
AJZ75373.130S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
rpl2450S ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. (164 aa)
AJZ75376.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
rpl2950S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family. (67 aa)
rps330S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (245 aa)
rps19p30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (131 aa)
rpl2350S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (88 aa)
AJZ75577.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
rpl3050S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
rpl1850S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (160 aa)
AJZ75683.150S ribosomal protein L32e; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
rpl19e50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (153 aa)
rps730S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (199 aa)
rps1230S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (145 aa)
AJZ75702.150S ribosomal protein L7ae; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
rps430S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (180 aa)
rps230S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family. (207 aa)
rps6e30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS6 family. (126 aa)
rpl7ae50S ribosomal protein L7; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (125 aa)
rps28e30S ribosomal protein S28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS28 family. (71 aa)
rpl24e50S ribosomal protein L24; Binds to the 23S rRNA. (66 aa)
rps3ae30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family. (204 aa)
rps1530S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
AJZ76395.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
AJZ76506.150S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
Your Current Organism:
Nitrosotenuis cloacae
NCBI taxonomy Id: 1603555
Other names: C. Nitrosotenuis cloacae, Candidatus Nitrosotenuis cloacae, Thaumarchaeota archaeon SAT1
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