(24 nodes) Mixed, incl. Lipid oxidation, and Protein tetramerization network (Desulfuromonas soudanensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC14994.1	acyl-CoA dehydrogenase/alkylation response protein AidB. (611 aa)
	etfB	Electron transfer flavoprotein beta subunit. (256 aa)
	ALC15101.1	Electron transfer flavoprotein alpha subunit apoprotein. (304 aa)
	ALC15102.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	ALC15103.1	3-hydroxyacyl-CoA dehydrogenase. (283 aa)
	ALC15104.1	enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
	ALC15105.1	acyl-CoA dehydrogenase/alkylation response protein AidB; Overlaps another CDS with the same product name. (385 aa)
	ALC15106.1	acyl-CoA dehydrogenase/alkylation response protein AidB; Overlaps another CDS with the same product name. (382 aa)
	ALC15107.1	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit. (324 aa)
	ALC15108.1	Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. (274 aa)
	ALC15109.1	crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. (273 aa)
	ALC15110.1	Hypothetical protein. (189 aa)
	ato-1	Succinyl:acetate coenzyme A transferase/acyl-CoA hydrolase. (519 aa)
	ALC15210.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	ALC16766.1	Electron transfer flavoprotein alpha subunit apoprotein. (304 aa)
	ALC16767.1	Electron transfer flavoprotein beta subunit. (256 aa)
	ALC16774.1	acyl-CoA dehydrogenase/alkylation response protein AidB. (594 aa)
	ALC16775.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
	ALC16776.1	3-hydroxyacyl-CoA dehydrogenase. (795 aa)
	ALC16980.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (419 aa)
	ALC17520.1	3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. (704 aa)
	ALC17625.1	Putative Zn-ribbon domain-containing OB-fold protein. (159 aa)
	ALC17626.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (430 aa)
	ALC17627.1	butyryl-CoA dehydrogenase. (384 aa)

Your Current Organism:

Desulfuromonas soudanensis

NCBI taxonomy Id: 1603606
Other names: D. soudanensis, Desulfuromonas sp. WTL, strain WTL

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC14994.1	ALC15101.1	DSOUD_0194	DSOUD_0306	acyl-CoA dehydrogenase/alkylation response protein AidB.	Electron transfer flavoprotein alpha subunit apoprotein.	0.854
ALC14994.1	ALC15102.1	DSOUD_0194	DSOUD_0307	acyl-CoA dehydrogenase/alkylation response protein AidB.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.589
ALC14994.1	ALC15103.1	DSOUD_0194	DSOUD_0308	acyl-CoA dehydrogenase/alkylation response protein AidB.	3-hydroxyacyl-CoA dehydrogenase.	0.785
ALC14994.1	ALC15104.1	DSOUD_0194	DSOUD_0309	acyl-CoA dehydrogenase/alkylation response protein AidB.	enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.863
ALC14994.1	ALC15109.1	DSOUD_0194	DSOUD_0314	acyl-CoA dehydrogenase/alkylation response protein AidB.	crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.	0.464
ALC14994.1	ALC15210.1	DSOUD_0194	DSOUD_0415	acyl-CoA dehydrogenase/alkylation response protein AidB.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.589
ALC14994.1	ALC16766.1	DSOUD_0194	DSOUD_1998	acyl-CoA dehydrogenase/alkylation response protein AidB.	Electron transfer flavoprotein alpha subunit apoprotein.	0.847
ALC14994.1	ALC16767.1	DSOUD_0194	DSOUD_1999	acyl-CoA dehydrogenase/alkylation response protein AidB.	Electron transfer flavoprotein beta subunit.	0.818
ALC14994.1	ALC16775.1	DSOUD_0194	DSOUD_2007	acyl-CoA dehydrogenase/alkylation response protein AidB.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.589
ALC14994.1	ALC16776.1	DSOUD_0194	DSOUD_2008	acyl-CoA dehydrogenase/alkylation response protein AidB.	3-hydroxyacyl-CoA dehydrogenase.	0.915
ALC14994.1	ALC16980.1	DSOUD_0194	DSOUD_2215	acyl-CoA dehydrogenase/alkylation response protein AidB.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.636
ALC14994.1	ALC17520.1	DSOUD_0194	DSOUD_2782	acyl-CoA dehydrogenase/alkylation response protein AidB.	3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.959
ALC14994.1	ALC17626.1	DSOUD_0194	DSOUD_2896	acyl-CoA dehydrogenase/alkylation response protein AidB.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.589
ALC14994.1	etfB	DSOUD_0194	DSOUD_0305	acyl-CoA dehydrogenase/alkylation response protein AidB.	Electron transfer flavoprotein beta subunit.	0.821
ALC15101.1	ALC14994.1	DSOUD_0306	DSOUD_0194	Electron transfer flavoprotein alpha subunit apoprotein.	acyl-CoA dehydrogenase/alkylation response protein AidB.	0.854
ALC15101.1	ALC15102.1	DSOUD_0306	DSOUD_0307	Electron transfer flavoprotein alpha subunit apoprotein.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.783
ALC15101.1	ALC15103.1	DSOUD_0306	DSOUD_0308	Electron transfer flavoprotein alpha subunit apoprotein.	3-hydroxyacyl-CoA dehydrogenase.	0.656
ALC15101.1	ALC15104.1	DSOUD_0306	DSOUD_0309	Electron transfer flavoprotein alpha subunit apoprotein.	enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.609
ALC15101.1	ALC15105.1	DSOUD_0306	DSOUD_0310	Electron transfer flavoprotein alpha subunit apoprotein.	acyl-CoA dehydrogenase/alkylation response protein AidB; Overlaps another CDS with the same product name.	0.969
ALC15101.1	ALC15106.1	DSOUD_0306	DSOUD_0311	Electron transfer flavoprotein alpha subunit apoprotein.	acyl-CoA dehydrogenase/alkylation response protein AidB; Overlaps another CDS with the same product name.	0.973