(33 nodes) Mixed, incl. Oxidoreductase activity, acting on a sulfur group of donors, and Cellular oxidant detoxification network (Desulfuromonas soudanensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC15073.1	Hemerythrin. (134 aa)
	ALC15157.1	Desulfoferredoxin; Contains superoxide reductase-like (SORL) domain. (160 aa)
	ALC15159.1	Hypothetical protein. (109 aa)
	ALC15160.1	Rubrerythrin. (169 aa)
	ALC15161.1	Hypothetical protein. (137 aa)
	ftn	Ferritin; Iron-storage protein. (170 aa)
	ALC15594.1	Hypothetical protein; DUF1722 superfamily. (234 aa)
	msrA	methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (183 aa)
	roo	Flavorubredoxin. (400 aa)
	ALC15770.1	Rubrerythrin. (190 aa)
	ALC15771.1	Desulfoferredoxin. (126 aa)
	ALC15803.1	Sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (224 aa)
	fur-2	Fe2+/Zn2+ uptake regulation protein; Belongs to the Fur family. (152 aa)
	ALC16066.1	Alkyl hydroperoxide reductase subunit AhpC/ peroxiredoxin. (175 aa)
	prx-3	Thioredoxin peroxidase. (66 aa)
	msrA-2	methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (214 aa)
	ALC16290.1	methionine-R-sulfoxide reductase. (171 aa)
	nrdJ	Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. (742 aa)
	trxB-2	Thioredoxin reductase. (358 aa)
	ALC17005.1	Protein disulfide bond isomerase, DsbC/DsbG-like; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (261 aa)
	ALC17216.1	Glutaredoxin. (119 aa)
	msrA-3	methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (196 aa)
	ALC17450.1	Hypothetical protein. (124 aa)
	prx-1	Thioredoxin peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (172 aa)
	ALC17640.1	Putative multiheme cytochrome c, extracellular electron transfer conduit cluster; 7 heme-binding sites. (255 aa)
	ALC17776.1	NADPH-dependent 2,4-dienoyl-CoA reductase/sulfur reductase. (448 aa)
	ALC17860.1	Rubredoxin. (52 aa)
	trxB-3	Thioredoxin-disulfide reductase. (317 aa)
	trxA	Thioredoxin; Belongs to the thioredoxin family. (109 aa)
	ALC18044.1	Small redox-active disulfide protein 2. (77 aa)
	ALC18045.1	Thioredoxin. (134 aa)
	dsbD	Cytochrome c biogenesis protein. (233 aa)
	ALC18146.1	Glutaredoxin, GrxC family; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. (89 aa)

Your Current Organism:

Desulfuromonas soudanensis

NCBI taxonomy Id: 1603606
Other names: D. soudanensis, Desulfuromonas sp. WTL, strain WTL

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC15073.1	roo	DSOUD_0273	DSOUD_0965	Hemerythrin.	Flavorubredoxin.	0.730
ALC15157.1	ALC15160.1	DSOUD_0362	DSOUD_0365	Desulfoferredoxin; Contains superoxide reductase-like (SORL) domain.	Rubrerythrin.	0.469
ALC15157.1	ALC16066.1	DSOUD_0362	DSOUD_1285	Desulfoferredoxin; Contains superoxide reductase-like (SORL) domain.	Alkyl hydroperoxide reductase subunit AhpC/ peroxiredoxin.	0.462
ALC15157.1	ALC17860.1	DSOUD_0362	DSOUD_3135	Desulfoferredoxin; Contains superoxide reductase-like (SORL) domain.	Rubredoxin.	0.748
ALC15157.1	ftn	DSOUD_0362	DSOUD_0608	Desulfoferredoxin; Contains superoxide reductase-like (SORL) domain.	Ferritin; Iron-storage protein.	0.805
ALC15157.1	roo	DSOUD_0362	DSOUD_0965	Desulfoferredoxin; Contains superoxide reductase-like (SORL) domain.	Flavorubredoxin.	0.800
ALC15159.1	ALC15160.1	DSOUD_0364	DSOUD_0365	Hypothetical protein.	Rubrerythrin.	0.515
ALC15160.1	ALC15157.1	DSOUD_0365	DSOUD_0362	Rubrerythrin.	Desulfoferredoxin; Contains superoxide reductase-like (SORL) domain.	0.469
ALC15160.1	ALC15159.1	DSOUD_0365	DSOUD_0364	Rubrerythrin.	Hypothetical protein.	0.515
ALC15160.1	ALC15161.1	DSOUD_0365	DSOUD_0366	Rubrerythrin.	Hypothetical protein.	0.445
ALC15160.1	ALC15771.1	DSOUD_0365	DSOUD_0985	Rubrerythrin.	Desulfoferredoxin.	0.433
ALC15160.1	ALC16066.1	DSOUD_0365	DSOUD_1285	Rubrerythrin.	Alkyl hydroperoxide reductase subunit AhpC/ peroxiredoxin.	0.426
ALC15160.1	ALC17860.1	DSOUD_0365	DSOUD_3135	Rubrerythrin.	Rubredoxin.	0.423
ALC15160.1	roo	DSOUD_0365	DSOUD_0965	Rubrerythrin.	Flavorubredoxin.	0.520
ALC15161.1	ALC15160.1	DSOUD_0366	DSOUD_0365	Hypothetical protein.	Rubrerythrin.	0.445
ALC15594.1	msrA	DSOUD_0807	DSOUD_0808	Hypothetical protein; DUF1722 superfamily.	methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.	0.701
ALC15770.1	ALC15771.1	DSOUD_0984	DSOUD_0985	Rubrerythrin.	Desulfoferredoxin.	0.875
ALC15770.1	ALC16066.1	DSOUD_0984	DSOUD_1285	Rubrerythrin.	Alkyl hydroperoxide reductase subunit AhpC/ peroxiredoxin.	0.426
ALC15770.1	ALC17860.1	DSOUD_0984	DSOUD_3135	Rubrerythrin.	Rubredoxin.	0.452
ALC15770.1	roo	DSOUD_0984	DSOUD_0965	Rubrerythrin.	Flavorubredoxin.	0.606