Your Input: | |
| | ADZ07930.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (349 aa) |
| | ADZ07943.1 | COG1737 Transcriptional regulators. (267 aa) |
| | ADZ07949.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (321 aa) |
| | ADZ07964.1 | COG2963 Transposase and inactivated derivatives. (460 aa) |
| | ADZ07966.1 | Polysaccharide polymerase. (409 aa) |
| | ADZ07970.1 | Glycosyltransferase Family 4 candidate a-glycosyltransferase; COG0438 Glycosyltransferase. (372 aa) |
| | ADZ07971.1 | EpsIM, putative glycosyltransferase; COG0438 Glycosyltransferase. (362 aa) |
| | ADZ07972.1 | Glycosyl transferase family protein. (164 aa) |
| | ADZ07984.1 | Hypothetical protein; COG3505 Type IV secretory pathway, VirD4 components. (264 aa) |
| | ADZ07990.1 | COG0194 Guanylate kinase. (182 aa) |
| | ADZ08011.1 | COG1484 DNA replication protein. (303 aa) |
| | ADZ08012.1 | Hypothetical protein; COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit. (283 aa) |
| | ADZ08014.1 | Hypothetical protein. (402 aa) |
| | ADZ08022.1 | COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components. (264 aa) |
| | ADZ08023.1 | Zinc ABC transporter ATPase protein; COG1121 ABC-type Mn/Zn transport systems, ATPase component. (215 aa) |
| | ADZ08025.1 | COG0640 Predicted transcriptional regulators. (92 aa) |
| | ADZ08074.1 | COG0675 Transposase and inactivated derivatives. (443 aa) |
| | ADZ08083.1 | COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (228 aa) |
| | ADZ08100.1 | COG4690 Dipeptidase. (470 aa) |
| | ADZ08102.1 | ABC transporter permease protein; COG0577 ABC-type antimicrobial peptide transport system, permease component. (353 aa) |
| | ADZ08114.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (349 aa) |
| | ADZ08123.1 | Maltose ABC transporter permease protein; COG1175 ABC-type sugar transport systems, permease components. (452 aa) |
| | ADZ08124.1 | Maltose ABC transporter permease protein; COG2182 Maltose-binding periplasmic proteins/domains. (408 aa) |
| | ADZ08125.1 | Maltose ABC transporter, ATP-binding protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily. (368 aa) |
| | pgmB | Beta-phosphoglucomutase; COG0637 Predicted phosphatase/phosphohexomutase. (221 aa) |
| | ADZ08131.1 | COG1609 Transcriptional regulators. (316 aa) |
| | guaC | Guanosine 5'-monophosphate oxidoreductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides; Belongs to the IMPDH/GMPR family. GuaC type 2 subfamily. (324 aa) |
| | ADZ08161.1 | ABC transporter permease protein; COG0577 ABC-type antimicrobial peptide transport system, permease component. (846 aa) |
| | dltA | D-alanine--poly(phosphoribitol) ligase subunit 1; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Belongs to [...] (504 aa) |
| | ADZ08186.1 | ABC transporter ATP binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component. (779 aa) |
| | ADZ08191.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (204 aa) |
| | ADZ08192.1 | COG1428 Deoxynucleoside kinases. (215 aa) |
| | ADZ08193.1 | COG1428 Deoxynucleoside kinases. (228 aa) |
| | ADZ08207.1 | Fnr/crp family transcriptional regulator; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (215 aa) |
| | ADZ08224.1 | COG0038 Chloride channel protein EriC. (519 aa) |
| | ADZ08226.1 | Pyruvate oxidase; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family. (602 aa) |
| | rnpA | Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (122 aa) |
| | ADZ06615.1 | Replication initiation protein RepA. (57 aa) |
| | ADZ06629.1 | Catabolite control protein A; COG1609 Transcriptional regulators. (333 aa) |
| | ADZ06631.1 | Hypothetical protein. (106 aa) |
| | ADZ06640.1 | COG0438 Glycosyltransferase. (387 aa) |
| | rpmD | COG1841 Ribosomal protein L30/L7E. (61 aa) |
| | ADZ06641.1 | COG0438 Glycosyltransferase. (347 aa) |
| | ADZ06654.1 | COG2963 Transposase and inactivated derivatives. (466 aa) |
| | ADZ06664.1 | COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit. (243 aa) |
| | ADZ06668.1 | Hypothetical protein. (610 aa) |
| | ADZ06705.1 | Hypothetical protein. (120 aa) |
| | ADZ06709.1 | Hypothetical protein. (371 aa) |
| | ADZ06711.1 | Arsenical resistance operon repressor; COG0640 Predicted transcriptional regulators. (103 aa) |
| | ADZ06716.1 | Galactosyltransferase; COG0438 Glycosyltransferase. (362 aa) |
| | nadE | NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. (276 aa) |
| | pcrA | COG0210 Superfamily I DNA and RNA helicases. (748 aa) |
| | gatA | aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (479 aa) |
| | gatB | aspartyl/glutamyl-tRNA amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (476 aa) |
| | ADZ06782.1 | COG1737 Transcriptional regulators. (269 aa) |
| | ADZ06794.1 | COG2963 Transposase and inactivated derivatives. (460 aa) |
| | ADZ06829.1 | Permease; COG0628 Predicted permease. (400 aa) |
| | ADZ06841.1 | Hypothetical protein. (220 aa) |
| | raiA | Phosphate starvation inducible protein stress related protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (180 aa) |
| | secA | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. (799 aa) |
| | gpsA | COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (339 aa) |
| | glgB | Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (635 aa) |
| | glgC | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (381 aa) |
| | glgD | Glucose-1-phosphate adenylyltransferase; COG0448 ADP-glucose pyrophosphorylase. (380 aa) |
| | uvrB | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (682 aa) |
| | uvrA | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (946 aa) |
| | rapZ | glmZ(sRNA)-inactivating NTPase; Displays ATPase and GTPase activities. (293 aa) |
| | ADZ06868.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (267 aa) |
| | eutD | COG0280 Phosphotransacetylase. (293 aa) |
| | ADZ06882.1 | COG0675 Transposase and inactivated derivatives. (443 aa) |
| | rpsE | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (168 aa) |
| | rpsH | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplE | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (180 aa) |
| | rplN | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsC | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (224 aa) |
| | rpsS | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (94 aa) |
| | rplB | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (278 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (212 aa) |
| | rpsG | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | ADZ06471.1 | COG2963 Transposase and inactivated derivatives. (460 aa) |
| | rpoC | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1217 aa) |
| | rpoB | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1213 aa) |
| | ADZ06458.1 | Hypothetical protein. (386 aa) |
| | ADZ06451.1 | Ribosomal protein S1; COG1098 Predicted RNA binding protein (contains ribosomal protein S1 domain). (120 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1164 aa) |
| | ADZ06418.1 | COG4690 Dipeptidase. (474 aa) |
| | rpoE | DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. (185 aa) |
| | ADZ06409.1 | COG1737 Transcriptional regulators. (240 aa) |
| | prs | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (324 aa) |
| | rnmV | Primase like protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (188 aa) |
| | ADZ06387.1 | COG0675 Transposase and inactivated derivatives. (443 aa) |
| | ADZ06384.1 | COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (343 aa) |
| | ADZ06382.1 | Inosine-5-monophosphate dehydrogenase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides. (380 aa) |
| | ADZ06376.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (349 aa) |
| | ADZ06364.1 | Na+-H+ antiporter; COG0475 Kef-type K+ transport systems, membrane components. (612 aa) |
| | ADZ06344.1 | COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase. (731 aa) |
| | ADZ06338.1 | Hypothetical protein. (465 aa) |
| | phnE-2 | COG3639 ABC-type phosphate/phosphonate transport system, permease component. (270 aa) |
| | phnE | COG3639 ABC-type phosphate/phosphonate transport system, permease component. (263 aa) |
| | nagA | COG1820 N-acetylglucosamine-6-phosphate deacetylase. (384 aa) |
| | ADZ06315.1 | Ribose-phosphate pyrophosphokinase; COG0462 Phosphoribosylpyrophosphate synthetase. (328 aa) |
| | ADZ06314.1 | COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen. (366 aa) |
| | ADZ06295.1 | Hypothetical protein; COG1403 Restriction endonuclease. (304 aa) |
| | ADZ06281.1 | ABC transporter ATP-binding protein; COG1122 ABC-type cobalt transport system, ATPase component. (417 aa) |
| | ADZ06278.1 | Sugar O-acetyltransferase; COG0110 Acetyltransferase (isoleucine patch superfamily). (204 aa) |
| | ADZ06273.1 | Hypothetical protein; COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I. (265 aa) |
| | ADZ06241.1 | COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (337 aa) |
| | ADZ06227.1 | Permease; COG0628 Predicted permease. (345 aa) |
| | ADZ06226.1 | Ribonucleoside triphosphate reductase; COG0209 Ribonucleotide reductase, alpha subunit. (744 aa) |
| | ADZ06224.1 | Hypothetical protein. (174 aa) |
| | ADZ06219.1 | Cytosol non-specific dipeptidase; COG4690 Dipeptidase. (507 aa) |
| | ADZ06217.1 | COG0110 Acetyltransferase (isoleucine patch superfamily). (191 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (464 aa) |
| | gyrA | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (821 aa) |
| | ADZ06196.1 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (376 aa) |
| | rplO | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | secY | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (431 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rpoA | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (312 aa) |
| | cbiO | Cobalt transporter ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (283 aa) |
| | rpsI | COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (131 aa) |
| | ADZ06532.1 | dUTPase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA. (183 aa) |
| | ADZ06538.1 | COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (181 aa) |
| | rplK | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa) |
| | rplA | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (230 aa) |
| | ADZ06558.1 | COG1226 Kef-type K+ transport systems, predicted NAD-binding component. (281 aa) |
| | dnaX | DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (602 aa) |
| | ADZ06568.1 | DNA polymerase III, delta subunit; COG0470 ATPase involved in DNA replication. (285 aa) |
| | ADZ06573.1 | Glycoprotein endopeptidase; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone. (244 aa) |
| | ADZ06579.1 | Putative oxalyl-CoA decarboxylase; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family. (570 aa) |
| | groEL | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (543 aa) |
| | mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (866 aa) |
| | mutL | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (626 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (195 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (338 aa) |
| | ADZ06607.1 | Hypothetical protein; COG0618 Exopolyphosphatase-related proteins. (318 aa) |
| | ADZ06612.1 | COG3906 Uncharacterized protein conserved in bacteria; Belongs to the UPF0473 family. (103 aa) |
| | mutS2 | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (785 aa) |
| | ADZ06883.1 | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. (177 aa) |
| | potA | Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (365 aa) |
| | ADZ06906.1 | Competence protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB. (324 aa) |
| | ADZ06908.1 | Competence protein. (114 aa) |
| | ADZ06918.1 | COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (238 aa) |
| | ADZ06926.1 | COG0769 UDP-N-acetylmuramyl tripeptide synthase. (434 aa) |
| | atpB | F0F1 ATP synthase subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. (237 aa) |
| | atpE | F0F1 ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (74 aa) |
| | atpF | F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (169 aa) |
| | atpH | F0F1 ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. (182 aa) |
| | atpA | F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (503 aa) |
| | atpG | F0F1 ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (320 aa) |
| | atpD | F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (479 aa) |
| | atpC | F0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane. (146 aa) |
| | ADZ06951.1 | Aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes. (386 aa) |
| | ADZ06961.1 | Hydrolase; COG0637 Predicted phosphatase/phosphohexomutase. (225 aa) |
| | ADZ06962.1 | COG2003 DNA repair proteins. (207 aa) |
| | ADZ06980.1 | COG2302 Uncharacterized conserved protein, contains S4-like domain. (266 aa) |
| | recD2 | Exodeoxyribonuclease V alpha chain; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (783 aa) |
| | ADZ06993.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (349 aa) |
| | rnj | Metallo-b-lactamase superfamily protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (559 aa) |
| | ADZ06997.1 | Hypothetical protein; COG5503 Uncharacterized conserved small protein; Belongs to the UPF0356 family. (73 aa) |
| | typA | GTP-binding protein TypA; COG1217 Predicted membrane GTPase involved in stress response. (614 aa) |
| | ADZ07006.1 | Competence protein ComEA; COG1555 DNA uptake protein and related DNA-binding proteins. (227 aa) |
| | ADZ07008.1 | COG1466 DNA polymerase III, delta subunit. (328 aa) |
| | rpsT | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (85 aa) |
| | rpsO | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | rnj-2 | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (601 aa) |
| | clpX | ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (423 aa) |
| | ADZ07039.1 | Cellobiose-specific PTS IIA; COG1447 Phosphotransferase system cellobiose-specific component IIA. (123 aa) |
| | fumC | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (467 aa) |
| | ADZ07079.1 | ABC transporter ATP binding protein; COG1122 ABC-type cobalt transport system, ATPase component. (566 aa) |
| | ADZ07094.1 | COG2963 Transposase and inactivated derivatives. (460 aa) |
| | coaBC | Pantothenate metabolism flavoprotein-like protein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (398 aa) |
| | ADZ07099.1 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (321 aa) |
| | uvrC | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (600 aa) |
| | rpmF | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (62 aa) |
| | ADZ07111.1 | COG0587 DNA polymerase III, alpha subunit. (1035 aa) |
| | pfkA | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (320 aa) |
| | rpsA | COG0539 Ribosomal protein S1. (403 aa) |
| | rnhB | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (252 aa) |
| | hslV | ATP-dependent protease subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. (174 aa) |
| | hslU | ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (465 aa) |
| | ADZ07157.1 | NAD+ binding protein for K+transport; COG0569 K+ transport systems, NAD-binding component. (223 aa) |
| | ADZ07159.1 | COG0514 Superfamily II DNA helicase. (588 aa) |
| | ADZ07160.1 | Trp repressor binding protein; COG0716 Flavodoxins. (150 aa) |
| | ADZ07169.1 | Transposase. (73 aa) |
| | ADZ07174.1 | Type 1 capsular polysaccharide biosynthesis protein; COG0438 Glycosyltransferase. (370 aa) |
| | ADZ07186.1 | Putative type IV restriction endonuclease; COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases. (1473 aa) |
| | ADZ07188.1 | COG0827 Adenine-specific DNA methylase. (226 aa) |
| | ADZ07194.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (349 aa) |
| | ADZ07206.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (349 aa) |
| | ADZ07207.1 | Hypothetical protein; COG1193 Mismatch repair ATPase (MutS family). (568 aa) |
| | ADZ07216.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (349 aa) |
| | ADZ07223.1 | COG2820 Uridine phosphorylase. (253 aa) |
| | ADZ07225.1 | COG2820 Uridine phosphorylase. (253 aa) |
| | ADZ07231.1 | COG2963 Transposase and inactivated derivatives. (466 aa) |
| | ADZ07248.1 | Hypothetical protein. (82 aa) |
| | ppk | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (730 aa) |
| | ribH | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. (159 aa) |
| | ADZ07286.1 | Maltose O-acetyltransferase; COG0110 Acetyltransferase (isoleucine patch superfamily). (56 aa) |
| | ADZ07287.1 | Maltose O-acetyltransferase; COG0110 Acetyltransferase (isoleucine patch superfamily). (63 aa) |
| | ADZ07290.1 | RpiR family regulatory protein; COG1737 Transcriptional regulators. (249 aa) |
| | ADZ07293.1 | Phosphorylase; COG2820 Uridine phosphorylase. (253 aa) |
| | ADZ07306.1 | COG0178 Excinuclease ATPase subunit. (834 aa) |
| | ADZ07329.1 | Phosphorylase, pnp/udp family protein; COG0813 Purine-nucleoside phosphorylase. (253 aa) |
| | ADZ07354.1 | COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP. (564 aa) |
| | ADZ07356.1 | COG0505 Carbamoylphosphate synthase small subunit. (351 aa) |
| | ADZ07368.1 | Initiation of chromosome replication protein; COG3935 Putative primosome component and related proteins. (227 aa) |
| | addA | ATP-dependent helicase/nuclease subunit A; ATP-dependent DNA helicase. (1206 aa) |
| | rexB | ATP-dependent exonuclease subunit B; ATP-dependent DNA helicase. (1160 aa) |
| | ADZ07378.1 | Hypothetical protein. (32 aa) |
| | rpoD | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (370 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (610 aa) |
| | glyS | COG0751 Glycyl-tRNA synthetase, beta subunit. (687 aa) |
| | glyQ | COG0752 Glycyl-tRNA synthetase, alpha subunit. (305 aa) |
| | ADZ07407.1 | NifU family SUF system FeS assembly protein; COG0822 NifU homolog involved in Fe-S cluster formation. (146 aa) |
| | ADZ07452.1 | Hypothetical protein. (244 aa) |
| | ADZ07463.1 | COG3617 Prophage antirepressor. (269 aa) |
| | ADZ07470.1 | Hypothetical protein. (267 aa) |
| | ADZ07476.1 | COG2963 Transposase and inactivated derivatives. (460 aa) |
| | ADZ07480.1 | Crp-like transcriptional regulator; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (208 aa) |
| | ADZ07503.1 | COG0031 Cysteine synthase. (283 aa) |
| | ADZ07520.1 | COG1358 Ribosomal protein HS6-type (S12/L30/L7a). (103 aa) |
| | proS | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] (565 aa) |
| | rpsB | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (257 aa) |
| | lexA | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (208 aa) |
| | ADZ07555.1 | COG0675 Transposase and inactivated derivatives. (443 aa) |
| | ffh | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (476 aa) |
| | ADZ07565.1 | COG4690 Dipeptidase. (473 aa) |
| | ADZ07571.1 | COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (310 aa) |
| | recG | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (678 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (799 aa) |
| | rpoZ | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (74 aa) |
| | gmk | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. (204 aa) |
| | xseB | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (80 aa) |
| | xseA | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (452 aa) |
| | nusB | Transcription termination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (130 aa) |
| | ADZ07627.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (206 aa) |
| | carA | COG0505 Carbamoylphosphate synthase small subunit; Belongs to the CarA family. (365 aa) |
| | pyrB | COG0540 Aspartate carbamoyltransferase, catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (318 aa) |
| | ADZ07657.1 | Cloride channel-like protein; COG0038 Chloride channel protein EriC. (444 aa) |
| | ADZ07672.1 | COG2963 Transposase and inactivated derivatives. (460 aa) |
| | hsdR | COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases. (492 aa) |
| | ADZ07685.1 | Simple sugar transport system ATP-binding protein; COG3845 ABC-type uncharacterized transport systems, ATPase components. (515 aa) |
| | ADZ07707.1 | ABC transporter nucleotide binding protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily. (370 aa) |
| | ADZ07709.1 | COG1175 ABC-type sugar transport systems, permease components. (291 aa) |
| | ADZ07719.1 | COG1874 Beta-galactosidase. (668 aa) |
| | ADZ07721.1 | Transcription repressor of beta-galactosidase gene; COG1609 Transcriptional regulators. (335 aa) |
| | ADZ07722.1 | Beta-galactosidase large subunit; COG3250 Beta-galactosidase/beta-glucuronidase. (626 aa) |
| | ADZ07723.1 | Beta-galactosidase small subunit; COG3250 Beta-galactosidase/beta-glucuronidase. (316 aa) |
| | ADZ07725.1 | GalR; COG1609 Transcriptional regulators. (107 aa) |
| | ADZ07726.1 | COG0675 Transposase and inactivated derivatives. (443 aa) |
| | ADZ07755.1 | Two-component system regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (238 aa) |
| | ADZ07772.1 | Primosomal protein DnaI; COG1484 DNA replication protein. (305 aa) |
| | ADZ07773.1 | COG3611 Replication initiation/membrane attachment protein. (449 aa) |
| | ADZ07781.1 | COG0675 Transposase and inactivated derivatives. (445 aa) |
| | ADZ07782.1 | COG0732 Restriction endonuclease S subunits. (494 aa) |
| | ADZ07783.1 | COG0286 Type I restriction-modification system methyltransferase subunit. (492 aa) |
| | ADZ07784.1 | COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases. (767 aa) |
| | ADZ07807.1 | phenylalanyl-tRNA synthetase; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (215 aa) |
| | trmB | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (218 aa) |
| | ADZ07817.1 | Phosphoesterase; COG0420 DNA repair exonuclease. (404 aa) |
| | ADZ07823.1 | COG2826 Transposase and inactivated derivatives, IS30 family. (78 aa) |
| | ADZ07827.1 | FNR/CRP family transcriptional regulator; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (164 aa) |
| | ADZ07839.1 | Biotin operon repressor; COG0340 Biotin-(acetyl-CoA carboxylase) ligase. (234 aa) |
| | ADZ07840.1 | COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH). (252 aa) |
| | ADZ07841.1 | COG0825 Acetyl-CoA carboxylase alpha subunit. (256 aa) |
| | accD | Acetyl-coenzyme a carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (281 aa) |
| | ADZ07843.1 | Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (460 aa) |
| | ADZ07845.1 | Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (147 aa) |
| | ADZ07848.1 | COG0331 (acyl-carrier-protein) S-malonyltransferase. (313 aa) |
| | ADZ07874.1 | Surface protein. (359 aa) |
| | ADZ07881.1 | Hypothetical protein; COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily. (431 aa) |
| | ADZ07883.1 | COG1175 ABC-type sugar transport systems, permease components. (288 aa) |
| | ADZ07884.1 | Multiple sugar-binding ABC-transporter ATPase protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily. (361 aa) |
| | ADZ07885.1 | COG4690 Dipeptidase. (475 aa) |
| | ADZ07889.1 | COG2323 Predicted membrane protein. (212 aa) |
| | ADZ07898.1 | COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (233 aa) |
| | ADZ07914.1 | COG3973 Superfamily I DNA and RNA helicases. (768 aa) |
| | ADZ07917.1 | ABC transporter permease protein; COG0577 ABC-type antimicrobial peptide transport system, permease component. (600 aa) |
| | ADZ07919.1 | COG4640 Predicted membrane protein. (424 aa) |
| | ADZ07925.1 | COG1737 Transcriptional regulators. (256 aa) |
