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| | recF | Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (375 aa) |
| | rpmH | COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (46 aa) |
| | ADZ08193.1 | COG1428 Deoxynucleoside kinases. (228 aa) |
| | ADZ08192.1 | COG1428 Deoxynucleoside kinases. (215 aa) |
| | ackA-3 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (392 aa) |
| | ADZ08100.1 | COG4690 Dipeptidase. (470 aa) |
| | ADZ08089.1 | Chromosome partitioning protein ParB; COG1475 Predicted transcriptional regulators; Belongs to the ParB family. (294 aa) |
| | ychF | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa) |
| | ADZ08077.1 | COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases. (409 aa) |
| | ADZ08074.1 | COG0675 Transposase and inactivated derivatives. (443 aa) |
| | ADZ08012.1 | Hypothetical protein; COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit. (283 aa) |
| | ADZ08011.1 | COG1484 DNA replication protein. (303 aa) |
| | ADZ07972.1 | Glycosyl transferase family protein. (164 aa) |
| | ADZ07938.1 | PTS system sucrose-specific transporter subunit EIIBC; COG1264 Phosphotransferase system IIB components. (500 aa) |
| | ADZ07910.1 | Acetyltransferase; COG2153 Predicted acyltransferase. (150 aa) |
| | ADZ07888.1 | COG0846 NAD-dependent protein deacetylases, SIR2 family. (266 aa) |
| | ADZ07885.1 | COG4690 Dipeptidase. (475 aa) |
| | ADZ07867.1 | COG0657 Esterase/lipase. (264 aa) |
| | ADZ07856.1 | Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain. (137 aa) |
| | ADZ07846.1 | 3-oxoacyl-[acyl-carrier protein] synthase ii; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (411 aa) |
| | ADZ07821.1 | Glycolate oxidase; COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases. (347 aa) |
| | ADZ07817.1 | Phosphoesterase; COG0420 DNA repair exonuclease. (404 aa) |
| | ADZ07808.1 | Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins. (106 aa) |
| | fhs-2 | Formate--tetrahydrofolate ligase; COG2759 Formyltetrahydrofolate synthetase; Belongs to the formate--tetrahydrofolate ligase family. (553 aa) |
| | purF | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. (483 aa) |
| | purD | COG0151 Phosphoribosylamine-glycine ligase; Belongs to the GARS family. (419 aa) |
| | ADZ07781.1 | COG0675 Transposase and inactivated derivatives. (445 aa) |
| | ADZ07773.1 | COG3611 Replication initiation/membrane attachment protein. (449 aa) |
| | ADZ07772.1 | Primosomal protein DnaI; COG1484 DNA replication protein. (305 aa) |
| | rpmI | COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (66 aa) |
| | rplT | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (118 aa) |
| | ADZ07763.1 | COG1816 Adenosine deaminase. (333 aa) |
| | yqeH | GTPase YqeH; COG1161 Predicted GTPases. (369 aa) |
| | nadD | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (217 aa) |
| | rpmG-2 | COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | ADZ07736.1 | COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid). (226 aa) |
| | ADZ07726.1 | COG0675 Transposase and inactivated derivatives. (443 aa) |
| | ADZ07680.1 | Putative Mrr restiction system protein; COG1715 Restriction endonuclease. (315 aa) |
| | ADZ07656.1 | Cation-transporting ATPase, P-type; COG0474 Cation transport ATPase. (873 aa) |
| | ADZ07613.1 | Lipase; COG0657 Esterase/lipase. (298 aa) |
| | rplU | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | rpmA | COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (96 aa) |
| | ADZ07596.1 | Geranyltranstransferase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. (289 aa) |
| | ADZ07594.1 | DNA repair protein recn; May be involved in recombinational repair of damaged DNA. (560 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (799 aa) |
| | rpmB | COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (61 aa) |
| | smc | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1189 aa) |
| | ADZ07565.1 | COG4690 Dipeptidase. (473 aa) |
| | rpsP | COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (90 aa) |
| | ADZ07555.1 | COG0675 Transposase and inactivated derivatives. (443 aa) |
| | rplS | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (115 aa) |
| | rpsB | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (257 aa) |
| | ADZ07520.1 | COG1358 Ribosomal protein HS6-type (S12/L30/L7a). (103 aa) |
| | ADZ07516.1 | Riboflavin kinase; COG0196 FAD synthase; Belongs to the ribF family. (309 aa) |
| | ADZ07499.1 | COG0474 Cation transport ATPase. (757 aa) |
| | ADZ07465.1 | COG1396 Predicted transcriptional regulators. (122 aa) |
| | ADZ07452.1 | Hypothetical protein. (244 aa) |
| | rpsU | COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (58 aa) |
| | ADZ07410.1 | ABC transporter ATPase component; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component. (233 aa) |
| | ADZ07409.1 | Hypothetical protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (407 aa) |
| | ADZ07406.1 | Hypothetical protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (467 aa) |
| | ybeY | Metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (174 aa) |
| | recO | DNA repair protein recO; Involved in DNA repair and RecF pathway recombination. (250 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (610 aa) |
| | fni | Isopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (338 aa) |
| | ADZ07368.1 | Initiation of chromosome replication protein; COG3935 Putative primosome component and related proteins. (227 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (209 aa) |
| | fhs | Formate--tetrahydrofolate ligase; COG2759 Formyltetrahydrofolate synthetase; Belongs to the formate--tetrahydrofolate ligase family. (558 aa) |
| | parE | DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 2 subfamily. (648 aa) |
| | ADZ07308.1 | Phosphotransferase; COG1859 RNA:NAD 2'-phosphotransferase. (91 aa) |
| | ADZ07248.1 | Hypothetical protein. (82 aa) |
| | ADZ07227.1 | Hypothetical protein; COG2334 Putative homoserine kinase type II (protein kinase fold). (273 aa) |
| | ADZ07189.1 | ATP-dependent helicase DinG; COG1199 Rad3-related DNA helicases. (683 aa) |
| | ADZ07185.1 | COG1715 Restriction endonuclease. (275 aa) |
| | ADZ07159.1 | COG0514 Superfamily II DNA helicase. (588 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (705 aa) |
| | ylqF | GTP binding protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (279 aa) |
| | ADZ07125.1 | DNA-binding protein II HB; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (91 aa) |
| | rpsA | COG0539 Ribosomal protein S1. (403 aa) |
| | rpmF | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (62 aa) |
| | ADZ07106.1 | Oxidoreductase, short chaindehydrogenase-reductase; COG0300 Short-chain dehydrogenases of various substrate specificities; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (264 aa) |
| | rnz | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (311 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (145 aa) |
| | ADZ07063.1 | ATPase, P-type (transporting), HAD superfamily, subfamily IC; COG0474 Cation transport ATPase. (805 aa) |
| | ADZ07022.1 | Amino acid amidohydrolase; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate. (384 aa) |
| | lysA | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (436 aa) |
| | rpsO | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | rpsT | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (85 aa) |
| | ADZ06980.1 | COG2302 Uncharacterized conserved protein, contains S4-like domain. (266 aa) |
| | ADZ06962.1 | COG2003 DNA repair proteins. (207 aa) |
| | ADZ06958.1 | COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. (627 aa) |
| | ADZ06951.1 | Aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes. (386 aa) |
| | ezrA | Septation ring formation regulator EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. (569 aa) |
| | rpsD | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (203 aa) |
| | ADZ06926.1 | COG0769 UDP-N-acetylmuramyl tripeptide synthase. (434 aa) |
| | ackA-2 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (394 aa) |
| | rpsZ | 30S ribosomal protein S14A; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | ADZ06882.1 | COG0675 Transposase and inactivated derivatives. (443 aa) |
| | ADZ06881.1 | Alpha/beta hydrolase fold-3 domain protein; COG0657 Esterase/lipase. (142 aa) |
| | raiA | Phosphate starvation inducible protein stress related protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (180 aa) |
| | ADZ06827.1 | COG0474 Cation transport ATPase. (918 aa) |
| | ADZ06802.1 | COG3425 3-hydroxy-3-methylglutaryl CoA synthase. (387 aa) |
| | ADZ06801.1 | COG1257 Hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family. (403 aa) |
| | ADZ06791.1 | ATP-dependent RNA helicase, DEAD-DEAH box; COG0513 Superfamily II DNA and RNA helicases. (413 aa) |
| | ADZ06781.1 | PTS system, arbutin-like IIBC component; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific. (626 aa) |
| | udk | COG0572 Uridine kinase. (212 aa) |
| | ADZ06737.1 | COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. (166 aa) |
| | ADZ06719.1 | Calcium-translocating P-type ATPase, PMCA-type; COG0474 Cation transport ATPase. (889 aa) |
| | ADZ06695.1 | Magnesium-translocating P-type ATPase; COG0474 Cation transport ATPase. (895 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (397 aa) |
| | ADZ06615.1 | Replication initiation protein RepA. (57 aa) |
| | trxA | Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family. (103 aa) |
| | ruvX | Holliday junction resolvase-like protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (142 aa) |
| | ADZ06608.1 | RNA helicase; COG0513 Superfamily II DNA and RNA helicases. (453 aa) |
| | ADZ06607.1 | Hypothetical protein; COG0618 Exopolyphosphatase-related proteins. (318 aa) |
| | ADZ06583.1 | PTS system, sucrose-specific IIABC component; COG1264 Phosphotransferase system IIB components. (649 aa) |
| | frc | Formyl-coenzyme A transferase; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate; Belongs to the CoA-transferase III family. Frc subfamily. (447 aa) |
| | ADZ06577.1 | Bile acid-inducible operon protein; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family. (378 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (199 aa) |
| | ADZ06563.1 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (109 aa) |
| | tadA | Cytidine-deoxycytidylate deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (168 aa) |
| | rplL | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (120 aa) |
| | rplJ | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (170 aa) |
| | rplA | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (230 aa) |
| | rplK | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa) |
| | rpmG | COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | mrnC | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (147 aa) |
| | ADZ06526.1 | Cation efflux protein; COG1230 Co/Zn/Cd efflux system component; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (299 aa) |
| | rpsI | COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (131 aa) |
| | rplM | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (147 aa) |
| | truA | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (264 aa) |
| | rplQ | COG0203 Ribosomal protein L17. (127 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (116 aa) |
| | rpmJ | COG0257 Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (218 aa) |
| | rplO | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | rpmD | COG1841 Ribosomal protein L30/L7E. (61 aa) |
| | rpsE | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (168 aa) |
| | rplR | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (119 aa) |
| | rplF | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (176 aa) |
| | rpsH | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rpsN | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rplE | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (180 aa) |
| | rplX | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (77 aa) |
| | rplN | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (88 aa) |
| | rpmC | COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (65 aa) |
| | rplP | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (146 aa) |
| | rpsC | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (224 aa) |
| | rplV | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (117 aa) |
| | rpsS | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (94 aa) |
| | rplB | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (278 aa) |
| | rplW | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (101 aa) |
| | rplD | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. (205 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (212 aa) |
| | rpsJ | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | rpsG | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsL | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (135 aa) |
| | ADZ06458.1 | Hypothetical protein. (386 aa) |
| | ADZ06455.1 | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (341 aa) |
| | ADZ06451.1 | Ribosomal protein S1; COG1098 Predicted RNA binding protein (contains ribosomal protein S1 domain). (120 aa) |
| | ADZ06445.1 | Hypothetical protein; COG0517 FOG: CBS domain. (235 aa) |
| | ADZ06442.1 | ATP-dependent RNA helicase-like protein; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family. (497 aa) |
| | rpmE2 | COG0254 Ribosomal protein L31. (81 aa) |
| | ADZ06432.1 | Streptothricine-acetyl-transferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. (174 aa) |
| | ADZ06428.1 | S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (174 aa) |
| | ADZ06418.1 | COG4690 Dipeptidase. (474 aa) |
| | ADZ06413.1 | COG1078 HD superfamily phosphohydrolases. (454 aa) |
| | rnmV | Primase like protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (188 aa) |
| | mgtA | Cation transporter P-ATPase; COG0474 Cation transport ATPase. (887 aa) |
| | ADZ06396.1 | Hypothetical protein. (205 aa) |
| | ADZ06395.1 | dCMP deaminase; COG2131 Deoxycytidylate deaminase. (159 aa) |
| | ADZ06393.1 | Hypothetical protein; Belongs to the SOS response-associated peptidase family. (199 aa) |
| | ADZ06387.1 | COG0675 Transposase and inactivated derivatives. (443 aa) |
| | tyrS | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (420 aa) |
| | ADZ06322.1 | Hypothetical protein; COG0789 Predicted transcriptional regulators. (249 aa) |
| | ADZ06303.1 | COG0846 NAD-dependent protein deacetylases, SIR2 family. (234 aa) |
| | ADZ06302.1 | COG0350 Methylated DNA-protein cysteine methyltransferase. (96 aa) |
| | ADZ06295.1 | Hypothetical protein; COG1403 Restriction endonuclease. (304 aa) |
| | ADZ06273.1 | Hypothetical protein; COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I. (265 aa) |
| | ADZ06250.1 | COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit. (569 aa) |
| | ADZ06223.1 | Cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (187 aa) |
| | ADZ06219.1 | Cytosol non-specific dipeptidase; COG4690 Dipeptidase. (507 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (464 aa) |
| | rpsR | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (78 aa) |
| | rpsF | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (98 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (654 aa) |
