STRINGSTRING
udk udk ADZ06762.1 ADZ06762.1 ADZ06812.1 ADZ06812.1 ADZ06832.1 ADZ06832.1 recA recA uvrA uvrA potA potA ADZ06906.1 ADZ06906.1 atpD atpD recD2 recD2 clpX clpX metN metN ADZ07079.1 ADZ07079.1 hslU hslU ADZ07201.1 ADZ07201.1 ADZ07276.1 ADZ07276.1 ADZ07306.1 ADZ07306.1 ADZ06319.1 ADZ06319.1 ADZ07342.1 ADZ07342.1 ADZ07343.1 ADZ07343.1 ADZ07389.1 ADZ07389.1 ADZ07410.1 ADZ07410.1 ADZ07515.1 ADZ07515.1 ADZ07544.1 ADZ07544.1 ADZ06281.1 ADZ06281.1 ADZ06232.1 ADZ06232.1 dnaB dnaB dnaA dnaA ADZ06297.1 ADZ06297.1 ADZ07573.1 ADZ07573.1 ADZ07574.1 ADZ07574.1 ADZ07614.1 ADZ07614.1 ADZ07615.1 ADZ07615.1 pstB-3 pstB-3 ADZ07668.1 ADZ07668.1 ADZ07685.1 ADZ07685.1 ADZ07707.1 ADZ07707.1 ADZ07811.1 ADZ07811.1 ADZ07884.1 ADZ07884.1 ADZ07896.1 ADZ07896.1 ADZ07912.1 ADZ07912.1 ADZ07918.1 ADZ07918.1 ADZ07999.1 ADZ07999.1 ADZ08023.1 ADZ08023.1 ADZ08035.1 ADZ08035.1 ADZ08048.1 ADZ08048.1 ADZ08084.1 ADZ08084.1 ADZ08085.1 ADZ08085.1 ADZ08101.1 ADZ08101.1 ADZ08125.1 ADZ08125.1 ADZ08133.1 ADZ08133.1 ADZ08157.1 ADZ08157.1 ADZ08160.1 ADZ08160.1 ADZ08180.1 ADZ08180.1 ADZ08186.1 ADZ08186.1 ADZ07545.1 ADZ07545.1 phnC phnC ADZ06385.1 ADZ06385.1 ADZ06386.1 ADZ06386.1 ftsH ftsH ADZ06467.1 ADZ06467.1 cbiO cbiO cbiO-2 cbiO-2 ADZ06520.1 ADZ06520.1 radA radA pstB pstB pstB-2 pstB-2 dnaX dnaX ADZ06580.1 ADZ06580.1 ruvB ruvB ADZ06751.1 ADZ06751.1 ADZ06757.1 ADZ06757.1 ADZ06758.1 ADZ06758.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
udkCOG0572 Uridine kinase. (212 aa)
ADZ06762.1Phosphate ABC transporter ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component. (246 aa)
ADZ06812.1ATP-dependent Clp protease ATP-binding subunit ClpE; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family. (682 aa)
ADZ06832.1COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; Belongs to the FtsK/SpoIIIE/SftA family. (811 aa)
recARecombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (364 aa)
uvrAExcinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (946 aa)
potASpermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (365 aa)
ADZ06906.1Competence protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB. (324 aa)
atpDF0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (479 aa)
recD2Exodeoxyribonuclease V alpha chain; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. (783 aa)
clpXATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (423 aa)
metNMethionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (353 aa)
ADZ07079.1ABC transporter ATP binding protein; COG1122 ABC-type cobalt transport system, ATPase component. (566 aa)
hslUATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (465 aa)
ADZ07201.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (329 aa)
ADZ07276.1Phosphate ABC transporter ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component. (246 aa)
ADZ07306.1COG0178 Excinuclease ATPase subunit. (834 aa)
ADZ06319.1Phosphate ABC transporter ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component. (242 aa)
ADZ07342.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (527 aa)
ADZ07343.1Lactococcin A ABC transporter ATP binding protein; COG1132 ABC-type multidrug transport system, ATPase and permease components. (531 aa)
ADZ07389.1ABC transporter ATP binding protein; COG1131 ABC-type multidrug transport system, ATPase component. (235 aa)
ADZ07410.1ABC transporter ATPase component; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component. (233 aa)
ADZ07515.1COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (506 aa)
ADZ07544.1ABC transporter, ATP-binding/permease protein; COG1132 ABC-type multidrug transport system, ATPase and permease components. (598 aa)
ADZ06281.1ABC transporter ATP-binding protein; COG1122 ABC-type cobalt transport system, ATPase component. (417 aa)
ADZ06232.1COG1101 ABC-type uncharacterized transport system, ATPase component. (253 aa)
dnaBReplicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (464 aa)
dnaAChromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (455 aa)
ADZ06297.1Phosphate ABC transporter ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component. (251 aa)
ADZ07573.1Oligopeptide ABC transporter ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily. (328 aa)
ADZ07574.1COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily. (342 aa)
ADZ07614.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (526 aa)
ADZ07615.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (525 aa)
pstB-3Phosphate transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (255 aa)
ADZ07668.1Phosphate ABC transporter ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component. (246 aa)
ADZ07685.1Simple sugar transport system ATP-binding protein; COG3845 ABC-type uncharacterized transport systems, ATPase components. (515 aa)
ADZ07707.1ABC transporter nucleotide binding protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily. (370 aa)
ADZ07811.1ABC transporter ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component. (247 aa)
ADZ07884.1Multiple sugar-binding ABC-transporter ATPase protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily. (361 aa)
ADZ07896.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (534 aa)
ADZ07912.1Glutamine ABC transporter; COG1126 ABC-type polar amino acid transport system, ATPase component. (206 aa)
ADZ07918.1ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component. (249 aa)
ADZ07999.1ABC transporter; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (513 aa)
ADZ08023.1Zinc ABC transporter ATPase protein; COG1121 ABC-type Mn/Zn transport systems, ATPase component. (215 aa)
ADZ08035.1COG4152 ABC-type uncharacterized transport system, ATPase component. (298 aa)
ADZ08048.1COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain. (720 aa)
ADZ08084.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (622 aa)
ADZ08085.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (574 aa)
ADZ08101.1ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component. (224 aa)
ADZ08125.1Maltose ABC transporter, ATP-binding protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily. (368 aa)
ADZ08133.1ABC transporter ATP-binding and membrane spanning protein; COG1132 ABC-type multidrug transport system, ATPase and permease components. (527 aa)
ADZ08157.1ATP-dependent Clp protease, ATP-binding subunit; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family. (709 aa)
ADZ08160.1ABC transporter ATPase protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component. (233 aa)
ADZ08180.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (524 aa)
ADZ08186.1ABC transporter ATP binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component. (779 aa)
ADZ07545.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (588 aa)
phnCPhosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. (257 aa)
ADZ06385.1ATP binding protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily. (352 aa)
ADZ06386.1COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily. (314 aa)
ftsHCell division protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (722 aa)
ADZ06467.1ATPase; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family. (829 aa)
cbiOCobalt transporter ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (283 aa)
cbiO-2Cobalt transporter ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (285 aa)
ADZ06520.1COG4619 ABC-type uncharacterized transport system, ATPase component. (211 aa)
radADNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (458 aa)
pstBPhosphate transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (264 aa)
pstB-2Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (251 aa)
dnaXDNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (602 aa)
ADZ06580.1ABC transporter, ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (638 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (338 aa)
ADZ06751.1COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (540 aa)
ADZ06757.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (576 aa)
ADZ06758.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (589 aa)
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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