STRINGSTRING
PP_0274 PP_0274 PP_0770 PP_0770 chpB chpB PP_1198 PP_1198 PP_1199 PP_1199 yhaV yhaV PP_1268 PP_1268 hicB hicB PP_1480 PP_1480 PP_1585 PP_1585 PP_1586 PP_1586 PP_1716 PP_1716 PP_1717 PP_1717 xre xre res res PP_2491 PP_2491 PP_2493 PP_2493 PP_2494 PP_2494 PP_2495 PP_2495 PP_2496 PP_2496 PP_2497 PP_2497 PP_2498 PP_2498 PP_2499 PP_2499 PP_2500 PP_2500 PP_2938 PP_2938 yoeB yoeB yefM yefM PP_3899 PP_3899 PP_3900 PP_3900 PP_3901 PP_3901 PP_4151 PP_4151 PP_4152 PP_4152 PP_4154 PP_4154 mqsA mqsA mqsR mqsR PP_4527 PP_4527 PP_4528 PP_4528 PP_4529 PP_4529 PP_4530 PP_4530 PP_4531 PP_4531 PP_5435 PP_5435 PP_5529 PP_5529
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PP_0274Putative transcriptional regulator containing HTH domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions. (157 aa)
PP_0770PemI-like protein. (84 aa)
chpBmRNA interferase; Function of homologous gene experimentally demonstrated in an other organism; factor; Regulatory functions. (115 aa)
PP_1198Transcriptional regulator, Cro/CI family (higA antitoxin like); Function of strongly homologous gene; regulator; Cellularprocesses : Toxin production and resistance. (98 aa)
PP_1199Toxin-antitoxin system, higB toxin like; Function of strongly homologous gene; enzyme; Cellularprocesses : Toxin production and resistance. (111 aa)
yhaVToxin endoribonuclease of toxin antitoxin system SohB(PrlF)-YhaV; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Transcription. (155 aa)
PP_1268Putative HtrA suppressor protein sohA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (129 aa)
hicBHicB protein. (110 aa)
PP_1480Homologs of previously reported genes of unknown function. (84 aa)
PP_1585Putative Antidote protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (99 aa)
PP_1586Putative Killer protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (92 aa)
PP_1716Transcriptional regulator, Cro/CI family. (112 aa)
PP_1717Homologs of previously reported genes of unknown function. (122 aa)
xreConserved protein of unknown function; Probable antitoxin component of a type II toxin-antitoxin (TA) system. In vivo probably neutralizes the toxic effect of cognate toxin Res. (159 aa)
resConserved protein of unknown function; Toxic component of a type II toxin-antitoxin (TA) system. Expression in E.coli inhibits cell growth. In vivo it is probably neutralized by cognate antitoxin Xre; this has not been shown upon expression in E.coli. Probably depletes intracellular NAD(+) (By similarity); Belongs to the MbcT/ParT/Res family. (145 aa)
PP_2491ThiJ/PfpI family protein. (225 aa)
PP_2493RadC family protein. (182 aa)
PP_2494Homologs of previously reported genes of unknown function. (333 aa)
PP_2495Homologs of previously reported genes of unknown function. (334 aa)
PP_2496Homologs of previously reported genes of unknown function. (342 aa)
PP_2497Homologs of previously reported genes of unknown function. (109 aa)
PP_2498Conserved protein of unknown function; Antitoxin component of a type II toxin-antitoxin (TA) system. (81 aa)
PP_2499Homologs of previously reported genes of unknown function. (90 aa)
PP_2500Homologs of previously reported genes of unknown function. (97 aa)
PP_2938Homologs of previously reported genes of unknown function. (228 aa)
yoeBToxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor; Function of homologous gene experimentally demonstrated in an other organism; factor; Cellularprocesses : Toxin production and resistance. (84 aa)
yefMAntitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor; Antitoxin component of a type II toxin-antitoxin (TA) system. (94 aa)
PP_3899Conserved protein of unknown function, hicB family; Homologs of previously reported genes of unknown function; Unknown function. (110 aa)
PP_3900Hypothetical protein; Homologs of previously reported genes of unknown function. (82 aa)
PP_3901Homologs of previously reported genes of unknown function. (86 aa)
PP_4151Excisionase domain protein. (157 aa)
PP_4152Homologs of previously reported genes of unknown function. (191 aa)
PP_4154Putative class 3 aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (976 aa)
mqsAAntitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor; Function of homologous gene experimentally demonstrated in an other organism; regulator; Regulatory functions. (133 aa)
mqsRMotility quorum-sensing regulator / GCU-specific mRNA interferase toxin; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription : Degradation of RNA. (98 aa)
PP_4527Putative permease of the drug/metabolite transporter (DMT) superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins. (308 aa)
PP_4528Homologs of previously reported genes of unknown function. (143 aa)
PP_4529Homologs of previously reported genes of unknown function. (84 aa)
PP_4530Homologs of previously reported genes of unknown function. (92 aa)
PP_4531Homologs of previously reported genes of unknown function. (90 aa)
PP_5435Homologs of previously reported genes of unknown function; Unknown function. (117 aa)
PP_5529Putative epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (100 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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