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| | gcdR | Transcriptional activator of gcdH, LysR family; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription; Belongs to the LysR transcriptional regulatory family. (305 aa) |
| | gcdH | glutaryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism. (393 aa) |
| | PP_0159 | Putative CoA-transferase family III; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity; Belongs to the CoA-transferase III family. (406 aa) |
| | gabD-I | Succinate-semialdehyde dehydrogenase (NADP+); Catalyzes the conversion of 5-oxopentanoate (glutarate semialdehyde) to glutarate. Involved in L-lysine degradation. (480 aa) |
| | gabT | 4-aminobutyrate aminotransferase; Catalyzes the conversion of 5-aminovalerate to 5- oxopentanoate. (425 aa) |
| | aguA | Agmatine deiminase; Mediates the hydrolysis of agmatine into N- carbamoylputrescine in the arginine decarboxylase (ADC) pathway of putrescine biosynthesis, a basic polyamine. (368 aa) |
| | glnE | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] (977 aa) |
| | davA | 5-aminopentanamidase; Function experimentally demonstrated in the studied strain; enzyme; Energymetabolism : Amino acids and amines. (264 aa) |
| | davB | Lysine 2-monooxygenase; Function experimentally demonstrated in the studied strain; enzyme; Energymetabolism : Amino acids and amines. (560 aa) |
| | PP_0384 | Transcriptional regulator, AsnC family. (153 aa) |
| | PP_0430 | Homologs of previously reported genes of unknown function. (318 aa) |
| | ansA | Type 1 L-asparaginase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines. (329 aa) |
| | speA | Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. (637 aa) |
| | gdhA | Glutamate dehydrogenase, NADP-dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Aminoacidbiosynthesis : Glutamate family; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (449 aa) |
| | PP_0894 | Homologs of previously reported genes of unknown function. (132 aa) |
| | PP_0895 | Homologs of previously reported genes of unknown function. (196 aa) |
| | PP_0896 | Carbon-nitrogen hydrolase family protein. (290 aa) |
| | PP_0949 | Putative ATP-binding protein UPF0042; Displays ATPase and GTPase activities. (284 aa) |
| | hpf | Ribosome hibernation promoting factor; During stationary phase, promotes and stabilizes dimerization of 70S ribosomes by the ribosome modulation factor (RMF), leading to the formation of inactive 100S ribosomes. Belongs to the HPF/YfiA ribosome-associated protein family. Short HPF subfamily. (102 aa) |
| | PP_1160 | Asparaginase family protein. (329 aa) |
| | ybgI | Putative metal-binding hydrolase-oxidase enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknown function. (252 aa) |
| | patD | Medium chain aldehyde dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines; Belongs to the aldehyde dehydrogenase family. (474 aa) |
| | glnD | Uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. (900 aa) |
| | nirB | Nitrite reductase [NAD(P)H] large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Anaerobic; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (850 aa) |
| | nirD | Nitrite reductase. (120 aa) |
| | PP_1748 | Homologs of previously reported genes of unknown function. (394 aa) |
| | PP_1749 | GNAT family acetyltransferase; Function experimentally demonstrated in the studied genus; enzyme; Central intermediary metabolism. (581 aa) |
| | asnB | Asparagine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (595 aa) |
| | mnmC | methyltransferase/FAD-dependent oxidoreductase; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family. (654 aa) |
| | PP_1753 | Putative permease of the drug/metabolite transporter (DMT) superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins. (324 aa) |
| | PP_1754 | Homologs of previously reported genes of unknown function. (386 aa) |
| | mtnA | Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). (358 aa) |
| | PP_1832 | Putative Oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (178 aa) |
| | PP_1867 | Homologs of previously reported genes of unknown function. (251 aa) |
| | PP_2040 | Major facilitator family transporter. (431 aa) |
| | gdhB | NAD-specific glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines. (1621 aa) |
| | nasA | Nitrate transporter. (411 aa) |
| | PP_2093 | NasT. (191 aa) |
| | PP_2094 | Putative Nitrate-binding protein NasS; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (404 aa) |
| | PP_2173 | Transcriptional regulator, AraC family. (289 aa) |
| | PP_2174 | Homologs of previously reported genes of unknown function. (130 aa) |
| | PP_2175 | Putative 3-oxoacyl-(Acyl-carrier-protein) reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (234 aa) |
| | PP_2177 | Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (184 aa) |
| | puuA-I | Glutamate-putrescine ligase; Function experimentally demonstrated in the studied genus; enzyme; Central intermediary metabolism; Belongs to the glutamine synthetase family. (448 aa) |
| | spuA | Glutamine amidotransferase; Function experimentally demonstrated in the studied genus; enzyme; Purines, pyrimidines, nucleosides, and nucleotides. (257 aa) |
| | spuC-I | Polyamine:pyruvate transaminase; Function experimentally demonstrated in the studied genus; enzyme; Central intermediary metabolism; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (452 aa) |
| | PP_2181 | Transcriptional regulator, Cro/CI family. (184 aa) |
| | PP_2182 | Conserved protein of unknown function; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. (171 aa) |
| | speB | Agmatinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Centralintermediarymetabolism : Polyamine biosynthesis; Belongs to the arginase family. (311 aa) |
| | PP_2245 | Transcriptional regulator, Cro/CI family. (197 aa) |
| | PP_2344 | Homologs of previously reported genes of unknown function. (359 aa) |
| | puuB | Gamma-glutamylputrescine oxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines. (427 aa) |
| | ansB | Glutaminase-asparaginase; Belongs to the asparaginase 1 family. (362 aa) |
| | sad-I | NAD+-dependent succinate semialdehyde dehydrogenase; Function experimentally demonstrated in the studied genus; enzyme; Biologicalprocesses : Scavenge (Catabolism). (463 aa) |
| | PP_2587 | LuxR family transcriptional regulator. (280 aa) |
| | PP_2588 | Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (460 aa) |
| | PP_2589 | Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family. (497 aa) |
| | PP_2601 | Transcriptional regulator, IclR family. (258 aa) |
| | gbd | Putative 4-hydroxybutyrate dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Fattyacidandphospholipidmetabolism : Degradation. (380 aa) |
| | PP_2799 | Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (459 aa) |
| | prr | Gamma-aminobutyraldehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the aldehyde dehydrogenase family. (474 aa) |
| | PP_2868 | Transcriptional regulator, Cro/CI family. (199 aa) |
| | PP_2871 | Class II aldolase/adducin domain protein. (251 aa) |
| | csiR | DNA-binding transcriptional repressor; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription. (231 aa) |
| | csiD | Carbon starvation induced protein; Acts as an alpha-ketoglutarate-dependent dioxygenase catalyzing hydroxylation of glutarate (GA) to L-2-hydroxyglutarate (L2HG). Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. (325 aa) |
| | lhgO | L-2-hydroxyglutarate oxidase; Function experimentally demonstrated in the studied genus; enzyme; Energy metabolism. (416 aa) |
| | ybgL | Putative nitrogen-containing compound degradation enzyme; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (252 aa) |
| | PP_2921 | Homologs of previously reported genes of unknown function. (313 aa) |
| | PP_2922 | Urea amidolyase-related protein. (323 aa) |
| | PP_2928 | Saccharopine dehydrogenase. (414 aa) |
| | nspC | Carboxynorspermidine/carboxyspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. (365 aa) |
| | PP_3125 | Putative transcriptional regulator (Cro/CI family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (180 aa) |
| | PP_3146 | Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (431 aa) |
| | PP_3148 | Putative Glutamine synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the glutamine synthetase family. (452 aa) |
| | sad-II | NAD+-dependent succinate semialdehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism). (461 aa) |
| | PP_3390 | Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (426 aa) |
| | PP_3391 | Putative Tartrate MFS transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (438 aa) |
| | PP_3392 | Homologs of previously reported genes of unknown function. (174 aa) |
| | PP_3393 | CAIB/BAIF family protein; Belongs to the CoA-transferase III family. (396 aa) |
| | PP_3394 | Putative 3-hydroxy-3-methylglutaryl-CoA lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the alpha-IPM synthase/homocitrate synthase family. (309 aa) |
| | PP_3395 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (321 aa) |
| | PP_3401 | Homologs of previously reported genes of unknown function. (95 aa) |
| | dpkA | Delta 1-piperideine-2-carboxylate reductase; Function experimentally demonstrated in the studied strain; enzyme; Energymetabolism : Amino acids and amines; Belongs to the LDH2/MDH2 oxidoreductase family. (332 aa) |
| | PP_3598 | Peptidase C26. (269 aa) |
| | PP_3603 | Transcriptional regulator, GntR family. (254 aa) |
| | PP_3624 | Homologs of previously reported genes of unknown function. (262 aa) |
| | PP_3649 | Transcriptional regulator, GntR family. (250 aa) |
| | yrpB | 2-nitropropane dioxygenase; Function experimentally demonstrated in the studied genus; enzyme; Biologicalprocesses : Protect. (361 aa) |
| | PP_4020 | Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (429 aa) |
| | PP_4108 | Putative 4-aminobutyrate aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (416 aa) |
| | ldcC | Lysine decarboxylase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines. (749 aa) |
| | PP_4270 | Homologs of previously reported genes of unknown function. (268 aa) |
| | PP_4399 | Putative Glutamine synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the glutamine synthetase family. (413 aa) |
| | gabD-II | Succinate-semialdehyde dehydrogenase (NADP+); Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines. (490 aa) |
| | astE | Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily. (335 aa) |
| | PP_4476 | Homologs of previously reported genes of unknown function. (96 aa) |
| | astB | N-succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2). (449 aa) |
| | astD | N-succinylglutamate 5-semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. (487 aa) |
| | astA-I | Arginine N-succinyltransferase, subunit beta; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines. (342 aa) |
| | astA-II | Arginine N-succinyltransferase, subunit alpha; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines. (339 aa) |
| | astC | Succinylornithine transaminase/acetylornithine aminotransferase; Function experimentally demonstrated in the studied genus; enzyme; Aminoacidbiosynthesis : Glutamate family; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (406 aa) |
| | PP_4482 | Transcriptional regulator, AraC family. (326 aa) |
| | ydiJ | Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (1006 aa) |
| | PP_4523 | Putative Agmatinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the arginase family. (320 aa) |
| | PP_4547 | Putative Glutamine synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the glutamine synthetase family. (454 aa) |
| | PP_4548 | Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (435 aa) |
| | PP_4575 | Urea amidolyase-related protein. (305 aa) |
| | ybgJ | Allophanate hydrolase subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism). (229 aa) |
| | pxpA2 | UPF0271 protein PP_4577; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (258 aa) |
| | hmgR | Hmg transcriptional repressor; Function experimentally demonstrated in the studied species; regulator; Energy metabolism. (277 aa) |
| | PP_4692 | Putative aspartate/tyrosine/aromatic aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (390 aa) |
| | PP_4695 | Sensory box histidine kinase. (991 aa) |
| | PP_4696 | Nitrogen regulation protein NR(I). (480 aa) |
| | PP_4955 | Homologs of previously reported genes of unknown function. (245 aa) |
| | elaA | Putative acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (150 aa) |
| | glnA | Glutamine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Aminoacidbiosynthesis : Glutamate family. (468 aa) |
| | glnL | Two-component system sensory histidine kinase/phosphatase GlnL/GlnG; Function of homologous gene experimentally demonstrated in an other organism; receptor; Centralintermediarymetabolism : Nitrogen metabolism. (361 aa) |
| | glnG | Two-component system DNA-binding transcriptional dual regulator GlnL/GlnG; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (478 aa) |
| | ynfM | Efflux transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins. (425 aa) |
| | gltD | Glutamate synthase (NADPH) beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Aminoacidbiosynthesis : Glutamate family. (472 aa) |
| | gltB | L-glutamate synthase(NADPH) alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Aminoacidbiosynthesis : Glutamate family. (1481 aa) |
| | spuC-II | Polyamine:pyruvate transaminase; Function experimentally demonstrated in the studied genus; enzyme; Central intermediary metabolism; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (453 aa) |
| | spuB | Glutamylpolyamine synthetase; Function experimentally demonstrated in the studied genus; enzyme; Centralintermediarymetabolism : Polyamine biosynthesis; Belongs to the glutamine synthetase family. (452 aa) |
| | spuI | Glutamylpolyamine synthetase; Function experimentally demonstrated in the studied genus; enzyme; Centralintermediarymetabolism : Polyamine biosynthesis; Belongs to the glutamine synthetase family. (458 aa) |
| | amtB | Ammonium transporter AmtB; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds. (443 aa) |
| | glnK | Activator of NRII(GlnL/NtrB) phosphatase; Function of homologous gene experimentally demonstrated in an other organism; regulator; Centralintermediarymetabolism : Nitrogen metabolism; Belongs to the P(II) protein family. (112 aa) |
| | amaA | L-pipecolate oxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines. (432 aa) |
| | amaB | L-piperidine-6-carboxylate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines; Belongs to the aldehyde dehydrogenase family. (496 aa) |
| | ydcJ | Metalloprotein, putative enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknown function. (464 aa) |
| | PP_5272 | Homologs of previously reported genes of unknown function. (117 aa) |
| | PP_5273 | Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (430 aa) |
| | kauB | 4-guanidinobutyraldehyde dehydrogenase; Function experimentally demonstrated in the studied genus; enzyme; Energy metabolism; Belongs to the aldehyde dehydrogenase family. (497 aa) |
| | PP_5298 | Putative glutamine amidotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Amino acids and amines. (255 aa) |
| | puuA-II | Glutamate-putrescine ligase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Aminoacidbiosynthesis : Glutamate family; Belongs to the glutamine synthetase family. (460 aa) |
| | aspA | Aspartate ammonia-lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines. (478 aa) |
| | rmf | Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family. (71 aa) |
| | PP_5704 | Homologs of previously reported genes of unknown function. (58 aa) |
