STRINGSTRING
PP_0666 PP_0666 dadA-I dadA-I PP_4435 PP_4435 PP_4452 PP_4452 ooxA ooxA ooxB ooxB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PP_0666Homologs of previously reported genes of unknown function. (120 aa)
dadA-ID-amino acid dehydrogenase 1 small subunit; Oxidative deamination of D-amino acids. (432 aa)
PP_4435Homologs of previously reported genes of unknown function. (117 aa)
PP_4452NAD/NADP octopine/nopaline dehydrogenase family protein. (359 aa)
ooxAOpine oxidase subunit A; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines. (464 aa)
ooxBOpine oxidase subunit B; Function of strongly homologous gene; enzyme; Energymetabolism : Amino acids and amines. (375 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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