(7 nodes) Mixed, incl. O-Antigen ligase, and ATPase-coupled lipid transmembrane transporter activity network (Pseudomonas putida KT2440)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PP_1089	Homologs of previously reported genes of unknown function. (160 aa)
	PP_1834	Homologs of previously reported genes of unknown function. (174 aa)
	PP_2447	Homologs of previously reported genes of unknown function. (244 aa)
	msbA	Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (602 aa)
	wzy	O-antigen polymerase. (391 aa)
	PP_4937	Toluene tolerance protein; Function experimentally demonstrated in the studied species; phenotype; Cellular processes. (201 aa)
	PP_5065	Homologs of previously reported genes of unknown function. (716 aa)

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_1089	PP_1834	PP_1089	PP_1834	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.624
PP_1089	PP_5065	PP_1089	PP_5065	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.624
PP_1834	PP_1089	PP_1834	PP_1089	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.624
PP_1834	PP_2447	PP_1834	PP_2447	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.629
PP_1834	PP_4937	PP_1834	PP_4937	Homologs of previously reported genes of unknown function.	Toluene tolerance protein; Function experimentally demonstrated in the studied species; phenotype; Cellular processes.	0.621
PP_2447	PP_1834	PP_2447	PP_1834	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.629
PP_2447	PP_5065	PP_2447	PP_5065	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.629
PP_4937	PP_1834	PP_4937	PP_1834	Toluene tolerance protein; Function experimentally demonstrated in the studied species; phenotype; Cellular processes.	Homologs of previously reported genes of unknown function.	0.621
PP_4937	PP_5065	PP_4937	PP_5065	Toluene tolerance protein; Function experimentally demonstrated in the studied species; phenotype; Cellular processes.	Homologs of previously reported genes of unknown function.	0.621
PP_4937	msbA	PP_4937	PP_4935	Toluene tolerance protein; Function experimentally demonstrated in the studied species; phenotype; Cellular processes.	Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.636
PP_4937	wzy	PP_4937	PP_4936	Toluene tolerance protein; Function experimentally demonstrated in the studied species; phenotype; Cellular processes.	O-antigen polymerase.	0.614
PP_5065	PP_1089	PP_5065	PP_1089	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.624
PP_5065	PP_2447	PP_5065	PP_2447	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.629
PP_5065	PP_4937	PP_5065	PP_4937	Homologs of previously reported genes of unknown function.	Toluene tolerance protein; Function experimentally demonstrated in the studied species; phenotype; Cellular processes.	0.621
msbA	PP_4937	PP_4935	PP_4937	Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	Toluene tolerance protein; Function experimentally demonstrated in the studied species; phenotype; Cellular processes.	0.636
msbA	wzy	PP_4935	PP_4936	Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	O-antigen polymerase.	0.766
wzy	PP_4937	PP_4936	PP_4937	O-antigen polymerase.	Toluene tolerance protein; Function experimentally demonstrated in the studied species; phenotype; Cellular processes.	0.614
wzy	msbA	PP_4936	PP_4935	O-antigen polymerase.	Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.766