STRINGSTRING
PP_0055 PP_0055 PP_0079 PP_0079 trpI trpI PP_0244 PP_0244 yhgF yhgF PP_0371 PP_0371 PP_0592 PP_0592 yigZ yigZ PP_0594 PP_0594 PP_0595 PP_0595 PP_0661 PP_0661 PP_0698 PP_0698 PP_1028 PP_1028 PP_1164 PP_1164 PP_1390 PP_1390 PP_1391 PP_1391 PP_1393 PP_1393 PP_1637 PP_1637 PP_1688 PP_1688 PP_1853 PP_1853 PP_1861 PP_1861 PP_1863 PP_1863 PP_1984 PP_1984 PP_2041 PP_2041 PP_2176 PP_2176 PP_2194 PP_2194 PP_2210 PP_2210 PP_2250 PP_2250 PP_2251 PP_2251 cysB cysB PP_2350 PP_2350 PP_2390 PP_2390 PP_2502 PP_2502 PP_2534 PP_2534 PP_2535 PP_2535 PP_2539 PP_2539 PP_2547 PP_2547 PP_2649 PP_2649 PP_2701 PP_2701 GbpR GbpR PP_2833 PP_2833 PP_2864 PP_2864 PP_2865 PP_2865 PP_2919 PP_2919 PP_2952 PP_2952 PP_2961 PP_2961 PP_3121 PP_3121 PP_3143 PP_3143 yneJ yneJ PP_3170 PP_3170 PP_3179 PP_3179 PP_3227 PP_3227 PP_3363 PP_3363 PP_3366 PP_3366 PP_3369 PP_3369 PP_3438 PP_3438 PP_3447 PP_3447 PP_3493 PP_3493 dmoA-II dmoA-II PP_3534 PP_3534 PP_3536 PP_3536 PP_3560 PP_3560 PP_3567 PP_3567 PP_3632 PP_3632 PP_3660 PP_3660 PP_3779 PP_3779 yaiW yaiW PP_3806 PP_3806 PP_3810 PP_3810 PP_3811 PP_3811 PP_3812 PP_3812 PP_3934 PP_3934 PP_3974 PP_3974 PP_4107 PP_4107 PP_4156 PP_4156 PP_4460 PP_4460 PP_4464 PP_4464 PP_4467 PP_4467 PP_4494 PP_4494 PP_4522 PP_4522 PP_4525 PP_4525 PP_4579 PP_4579 PP_4601 PP_4601 PP_4623 PP_4623 cidB cidB cidA cidA cidR cidR PP_4660 PP_4660 PP_4662 PP_4662 PP_4664 PP_4664 PP_4668 PP_4668 PP_4929 PP_4929 PP_5070 PP_5070 ynfL ynfL PP_5138 PP_5138 PP_5259 PP_5259 PP_5261 PP_5261 PP_5300 PP_5300 PP_5337 PP_5337 PP_5348 PP_5348 PP_5375 PP_5375 PP_5479 PP_5479 PP_5599 PP_5599
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PP_0055Transcriptional regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family. (295 aa)
PP_0079Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (299 aa)
trpIHTH-type transcriptional regulator TrpI; Belongs to the LysR transcriptional regulatory family. (298 aa)
PP_0244Homologs of previously reported genes of unknown function. (127 aa)
yhgFPutative transcriptional accessory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Transcription. (861 aa)
PP_0371Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (307 aa)
PP_0592Oxidoreductase, short chain dehydrogenase/reductase family. (228 aa)
yigZPutative ribosome-binding factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Proteinsynthesis : Translation factors. (194 aa)
PP_0594Transcriptional regulator, TetR family. (247 aa)
PP_0595Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)
PP_0661Putative Transcriptional regulator AmpR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the LysR transcriptional regulatory family. (294 aa)
PP_0698Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)
PP_1028Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)
PP_1164Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (298 aa)
PP_1390Homologs of previously reported genes of unknown function. (60 aa)
PP_1391Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (302 aa)
PP_1393Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions; Belongs to the LysR transcriptional regulatory family. (291 aa)
PP_1637Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (308 aa)
PP_1688Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (309 aa)
PP_1853Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (312 aa)
PP_1861Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (317 aa)
PP_1863Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (283 aa)
PP_1984Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)
PP_2041Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (314 aa)
PP_2176Transcriptional regulator, LysR family; Function of strongly homologous gene; regulator; Regulatory functions; Belongs to the LysR transcriptional regulatory family. (309 aa)
PP_2194Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (296 aa)
PP_2210LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (287 aa)
PP_2250Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)
PP_2251Homologs of previously reported genes of unknown function. (142 aa)
cysBTranscriptional dual regulator / CysB-O-acetyl-L-serine; Function of homologous gene experimentally demonstrated in an other organism; regulator; Aminoacidbiosynthesis : Serine family; Belongs to the LysR transcriptional regulatory family. (324 aa)
PP_2350LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (288 aa)
PP_2390Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (306 aa)
PP_2502Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (308 aa)
PP_2534Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (299 aa)
PP_2535Putative inner membrane transport protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins. (391 aa)
PP_2539Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (308 aa)
PP_2547Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (289 aa)
PP_2649Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (313 aa)
PP_2701Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (312 aa)
GbpRGalactose-binding protein regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family. (315 aa)
PP_2833Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (323 aa)
PP_2864Homologs of previously reported genes of unknown function. (123 aa)
PP_2865Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)
PP_2919Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)
PP_2952Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (296 aa)
PP_2961Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)
PP_3121Transcriptional regulator, LysR family; Function of homologous gene experimentally demonstrated in an other organism; regulator; Regulatoryfunctions : DNA interactions; Belongs to the LysR transcriptional regulatory family. (301 aa)
PP_3143Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (313 aa)
yneJPutative DNA-binding transcriptional regulator, LysR-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Transcription; Belongs to the LysR transcriptional regulatory family. (288 aa)
PP_3170Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (303 aa)
PP_3179Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (299 aa)
PP_3227Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (296 aa)
PP_3363Putative thymidylate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Purines, pyrimidines, nucleosides, and nucleotides. (205 aa)
PP_3366Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (293 aa)
PP_3369Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (283 aa)
PP_3438Homologs of previously reported genes of unknown function. (193 aa)
PP_3447Homologs of previously reported genes of unknown function. (143 aa)
PP_3493Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (310 aa)
dmoA-IIDimethyl-sulfide monooxygenase; Function of strongly homologous gene; enzyme; Central intermediary metabolism. (454 aa)
PP_3534Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (293 aa)
PP_3536Homologs of previously reported genes of unknown function. (362 aa)
PP_3560Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (287 aa)
PP_3567Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)
PP_3632Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)
PP_3660Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (295 aa)
PP_3779Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (310 aa)
yaiWLipoprotein required for swarming; Function of homologous gene experimentally demonstrated in an other organism; lipoprotein; Cell envelope. (350 aa)
PP_3806Hydrolase, isochorismatase family. (183 aa)
PP_3810Homologs of previously reported genes of unknown function. (133 aa)
PP_3811Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (294 aa)
PP_3812Putative Lipase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (339 aa)
PP_3934Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (313 aa)
PP_3974Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (328 aa)
PP_4107Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (298 aa)
PP_4156Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)
PP_4460Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (308 aa)
PP_4464Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)
PP_4467Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)
PP_4494Putative LysR-type transcriptional activator protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the LysR transcriptional regulatory family. (294 aa)
PP_4522Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (297 aa)
PP_4525Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (297 aa)
PP_4579Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (303 aa)
PP_4601Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (295 aa)
PP_4623Homologs of previously reported genes of unknown function. (1100 aa)
cidBAnti-holin regulator of holin CidA; Function of homologous gene experimentally demonstrated in an other organism; regulator. (228 aa)
cidAHolin regulator of murein hydrolases; Function of homologous gene experimentally demonstrated in an other organism; regulator. (128 aa)
cidRTranscriptional regulator, LysR family; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family. (293 aa)
PP_4660Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (298 aa)
PP_4662Homologs of previously reported genes of unknown function. (104 aa)
PP_4664Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (293 aa)
PP_4668Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (316 aa)
PP_4929Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)
PP_5070ParA family protein. (257 aa)
ynfLPutative DNA-binding transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatoryfunctions : DNA interactions; Belongs to the LysR transcriptional regulatory family. (299 aa)
PP_5138Putative transcriptional regulator LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Biologicalprocesses : Control; Belongs to the LysR transcriptional regulatory family. (289 aa)
PP_5259Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (296 aa)
PP_5261Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (308 aa)
PP_5300Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (349 aa)
PP_5337LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (305 aa)
PP_5348Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (320 aa)
PP_5375Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (302 aa)
PP_5479Transcriptional regulator HTH, LysR family; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family. (292 aa)
PP_5599Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions; Belongs to the LysR transcriptional regulatory family. (290 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.