STRINGSTRING
PP_0079 PP_0079 trpI trpI PP_0698 PP_0698 PP_1393 PP_1393 PP_1637 PP_1637 PP_1853 PP_1853 PP_1863 PP_1863 PP_2041 PP_2041 PP_2176 PP_2176 PP_2210 PP_2210 PP_2539 PP_2539 PP_2649 PP_2649 PP_2701 PP_2701 GbpR GbpR yneJ yneJ PP_3660 PP_3660 PP_3779 PP_3779 PP_3934 PP_3934 PP_4460 PP_4460 PP_4464 PP_4464 PP_4467 PP_4467 PP_4601 PP_4601 PP_4664 PP_4664 PP_4929 PP_4929 PP_5479 PP_5479 PP_5599 PP_5599
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PP_0079Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family. (299 aa)
trpIHTH-type transcriptional regulator TrpI; Belongs to the LysR transcriptional regulatory family. (298 aa)
PP_0698Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)
PP_1393Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions; Belongs to the LysR transcriptional regulatory family. (291 aa)
PP_1637Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (308 aa)
PP_1853Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (312 aa)
PP_1863Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (283 aa)
PP_2041Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (314 aa)
PP_2176Transcriptional regulator, LysR family; Function of strongly homologous gene; regulator; Regulatory functions; Belongs to the LysR transcriptional regulatory family. (309 aa)
PP_2210LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (287 aa)
PP_2539Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (308 aa)
PP_2649Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (313 aa)
PP_2701Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (312 aa)
GbpRGalactose-binding protein regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family. (315 aa)
yneJPutative DNA-binding transcriptional regulator, LysR-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Transcription; Belongs to the LysR transcriptional regulatory family. (288 aa)
PP_3660Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (295 aa)
PP_3779Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (310 aa)
PP_3934Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (313 aa)
PP_4460Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (308 aa)
PP_4464Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)
PP_4467Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)
PP_4601Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (295 aa)
PP_4664Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (293 aa)
PP_4929Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)
PP_5479Transcriptional regulator HTH, LysR family; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family. (292 aa)
PP_5599Putative transcriptional regulator, LysR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions; Belongs to the LysR transcriptional regulatory family. (290 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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