STRINGSTRING
PP_0055 PP_0055 PP_1164 PP_1164 PP_2952 PP_2952 PP_3493 PP_3493 PP_3974 PP_3974 PP_5300 PP_5300
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PP_0055Transcriptional regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family. (295 aa)
PP_1164Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (298 aa)
PP_2952Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (296 aa)
PP_3493Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (310 aa)
PP_3974Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (328 aa)
PP_5300Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (349 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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