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PP_0244 PP_0244 yhgF yhgF PP_3363 PP_3363 dmoA-II dmoA-II PP_3534 PP_3534
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PP_0244Homologs of previously reported genes of unknown function. (127 aa)
yhgFPutative transcriptional accessory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Transcription. (861 aa)
PP_3363Putative thymidylate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Purines, pyrimidines, nucleosides, and nucleotides. (205 aa)
dmoA-IIDimethyl-sulfide monooxygenase; Function of strongly homologous gene; enzyme; Central intermediary metabolism. (454 aa)
PP_3534Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (293 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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