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| | PP_0163 | Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (229 aa) |
| | PP_0620 | GntR family transcriptional regulator. (254 aa) |
| | PP_0968 | Homologs of previously reported genes of unknown function. (413 aa) |
| | PP_0969 | Transcriptional regulator, GntR family. (216 aa) |
| | PP_0970 | Cyanate MFS transporter. (434 aa) |
| | PP_0971 | Homologs of previously reported genes of unknown function. (158 aa) |
| | PP_0972 | UPF0213 protein PP_0972; Belongs to the UPF0213 family. (105 aa) |
| | PP_1255 | Putative cis-4-hydroxy-D-proline oxidase; No homology to any previously reported sequences; putative enzyme; Energymetabolism : Amino acids and amines. (415 aa) |
| | PP_1256 | Putative alpha-ketoglutarate semialdehyde dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Amino acids and amines. (525 aa) |
| | PP_1257 | Putative 1-pyrroline-4-hydroxy-2-carboxylate deaminase; No homology to any previously reported sequences; putative enzyme; Energymetabolism : Amino acids and amines; Belongs to the DapA family. (315 aa) |
| | prpA | 4-hydroxyproline epimerase; Catalyzes the reversible epimerization of cis-4-hydroxy-D- proline (c4DHyp) to trans-4-hydroxy-L-proline (t4LHyp). May be involved in a degradation pathway that allows P.putida strain KT2440 to grow on either epimer of 4-hydroxyproline, c4DHyp and t4LHyp, as the sole carbon and nitrogen source. Does not exhibit measureable racemase activity in vitro with any of the 19 natural chiral amino acid enantiomers. (308 aa) |
| | PP_1265 | Homologs of previously reported genes of unknown function. (66 aa) |
| | pcaR | Transcription regulatory protein (pca regulon); Function experimentally demonstrated in the studied species; regulator; Energy metabolism. (291 aa) |
| | pcaK | 4-hydroxybenzoate transporter; Function experimentally demonstrated in the studied species; transporter; Transport and binding proteins. (448 aa) |
| | pcaF-I | beta-ketoadipyl-CoA thiolase; Function experimentally demonstrated in the studied strain; enzyme; Energy metabolism; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa) |
| | pcaB | 3-carboxy-cis,cis-muconate cycloisomerase; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism). (450 aa) |
| | pcaD | 3-oxoadipate enol-lactonase 2; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism). (263 aa) |
| | pcaC | 4-carboxymuconolactone decarboxylase; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism). (130 aa) |
| | pcaP | Putative porin-encoding gene; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (174 aa) |
| | truD | tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. (352 aa) |
| | pcm | Protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. (231 aa) |
| | PP_1697 | Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator; Transcription. (243 aa) |
| | PP_1698 | Major facilitator family transporter. (424 aa) |
| | PP_1699 | 2-pyrone-4,6-dicarboxylic acid hydrolase; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation. (280 aa) |
| | PP_1707 | D-isomer specific 2-hydroxyacid dehydrogenase family protein. (316 aa) |
| | PP_1708 | Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa) |
| | PP_1710 | MFS transporter, phthalate permease family. (446 aa) |
| | PP_1712 | Homologs of previously reported genes of unknown function. (469 aa) |
| | pcaQ | Transcriptional regulator PcaQ; Belongs to the LysR transcriptional regulatory family. (310 aa) |
| | PP_1820 | Benzoate transport protein. (398 aa) |
| | PP_1876 | Putative ATP/GTP-binding protein of the AAA+ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (295 aa) |
| | ybhD | Putative DNA-binding transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Transcription; Belongs to the LysR transcriptional regulatory family. (297 aa) |
| | PP_2055 | Putative isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (359 aa) |
| | yraO | Uncharacterized transporter YraO. (434 aa) |
| | PP_2058 | Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (417 aa) |
| | PP_2066 | Transcriptional regulator, GntR family. (254 aa) |
| | PP_2252 | Homologs of previously reported genes of unknown function. (349 aa) |
| | PP_2253 | Transcriptional regulator, GntR family. (222 aa) |
| | PP_2254 | Transcriptional regulator, GntR family. (232 aa) |
| | PP_2256 | Transcriptional regulator, Cro/CI family. (104 aa) |
| | PP_2333 | GntR family transcriptional regulator. (238 aa) |
| | gllD | 4-oxalomesaconate tautomerase; Catalyzes the tautomerization of the 4-oxalomesaconic acid keto (OMAketo) generated by GalA dioxygenase to 4-oxalomesaconic acid enol (OMAenol). Mediates the second step in gallate degradation pathway. (361 aa) |
| | gllC | 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase; Catalyzes the conversion of 4-carboxy-4-hydroxy-2-oxoadipic acid (CHA) to pyruvate and oxaloacetate, the last step of gallate degradation pathway; Belongs to the LigK/PcmE family. (238 aa) |
| | gllB | 4-oxalmesaconate hydratase; Catalyzes the conversion of oxalomesaconic acid enol (OMAenol) to 4-carboxy-4-hydroxy-2-oxoadipic acid (CHA). Mediates the third step of gallate degradation pathway. (258 aa) |
| | gllR | HTH-type transcriptional regulator GalR; Transcriptional regulator for the galBCD and galTAP operons, encoding genes of the gallate degradation pathway. (397 aa) |
| | glllA | Gallate dioxygenase; Ring-cleavage dioxygenase that acts specifically on gallate to produce the keto-tautomer of 4-oxalomesaconate. Mediates the first step of gallate degradation pathway. (420 aa) |
| | quiC | Putative 3-dehydroshikimate dehydratase; Catalyzes the conversion of 3-dehydroshikimate to protocatechuate (3,4-dihydroxybenzoate), a common intermediate of quinate and shikimate degradation pathways. (635 aa) |
| | PP_2585 | Alpha-ketoglutaric semialdehyde dehydrogenase. (526 aa) |
| | PP_2600 | Homologs of previously reported genes of unknown function. (570 aa) |
| | ligC | Putative 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Biologicalprocesses : Scavenge (Catabolism). (350 aa) |
| | PP_2603 | Homologs of previously reported genes of unknown function. (271 aa) |
| | PP_2605 | Homologs of previously reported genes of unknown function. (562 aa) |
| | PP_2606 | Homologs of previously reported genes of unknown function. (106 aa) |
| | PP_2607 | Homologs of previously reported genes of unknown function. (577 aa) |
| | PP_2608 | Shikimate dehydrogenase family protein. (269 aa) |
| | PP_2609 | Transcriptional regulator, IclR family. (256 aa) |
| | PP_2662 | Homologs of previously reported genes of unknown function. (395 aa) |
| | PP_2830 | Major facilitator family transporter. (450 aa) |
| | fucD | L-fuconate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Pentose phosphate pathway; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (411 aa) |
| | PP_2834 | Putative D-galactarate dehydratase/Altronate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Sugars. (513 aa) |
| | PP_2835 | Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Biologicalprocesses : Scavenge (Catabolism); Belongs to the LDH2/MDH2 oxidoreductase family. (344 aa) |
| | PP_2836 | Putative 2-keto-3-deoxyxylonate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Sugars. (405 aa) |
| | PP_2837 | Putative uronate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (436 aa) |
| | PP_2838 | Conserved protein of unknown function; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (549 aa) |
| | PP_2839 | Homologs of previously reported genes of unknown function. (762 aa) |
| | benA | Benzoate 1,2-dioxygenase subunit alpha; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism. (452 aa) |
| | benB | Benzoate 1,2-dioxygenase subunit beta; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism. (161 aa) |
| | benC | Benzoate 1,2-dioxygenase electron transfer component; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism. (336 aa) |
| | benD | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (253 aa) |
| | benK | Benzoate MFS transporter; Function of strongly homologous gene; transporter; Energy metabolism. (442 aa) |
| | catA-II | Catechol 1,2-dioxygenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism. (304 aa) |
| | benE-II | Benzoate transport protein; Function of strongly homologous gene; transporter; Energy metabolism. (423 aa) |
| | nicP-I | Porin-like protein; Function experimentally demonstrated in the studied strain; transporter. (416 aa) |
| | PP_3180 | Smp-30/Cgr1 family protein. (346 aa) |
| | mhpT | 3-hydroxyphenylpropionate / 3-hydroxycinnamate:H+ symporter; Function of strongly homologous gene; transporter; Fattyacidandphospholipidmetabolism : Degradation. (413 aa) |
| | fcs | feruloyl-CoA-synthetase; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism). (627 aa) |
| | vdh | Vanillin dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism); Belongs to the aldehyde dehydrogenase family. (482 aa) |
| | PP_3358 | hydroxycinnamoyl-CoA hydratase-lyase; Function of strongly homologous gene; enzyme; Biologicalprocesses : Scavenge (Catabolism); Belongs to the enoyl-CoA hydratase/isomerase family. (276 aa) |
| | PP_3359 | Putative Hydroxycinnamic acid degradation regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (156 aa) |
| | PP_3527 | Transcriptional regulator, TetR family. (227 aa) |
| | pobA | P-hydroxybenzoate hydroxylase; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation. (395 aa) |
| | pobR | Transcriptional regulator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism. (292 aa) |
| | PP_3588 | Multidrug resistance transporter, Bcr/CflA family. (395 aa) |
| | kdgD | 5-dehydro-4-deoxyglucarate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the DapA family. (303 aa) |
| | gudP | Glucarate transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Energy metabolism. (454 aa) |
| | garD | Galactarate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation. (517 aa) |
| | PP_3602 | 2,5-dioxovalerate dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism. (526 aa) |
| | PP_3648 | Carboxymuconolactone decarboxylase family protein. (129 aa) |
| | catA-I | Catechol 1,2-dioxygenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism. (311 aa) |
| | catC | Muconolactone Delta-isomerase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism; Belongs to the muconolactone Delta-isomerase family. (96 aa) |
| | catB | Muconate cycloisomerase 1; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (373 aa) |
| | catR | HTH-type transcriptional regulator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism; Belongs to the LysR transcriptional regulatory family. (290 aa) |
| | vanA | Vanillate O-demethylase oxygenase subunit; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism). (355 aa) |
| | vanB | Vanillate O-demethylase oxidoreductase; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism). (316 aa) |
| | PP_3738 | Putative Transcriptional regulator VanR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (237 aa) |
| | galP-IV | Porin-like protein; Function experimentally demonstrated in the studied strain; transporter. (417 aa) |
| | PP_3740 | Major facilitator family transporter. (446 aa) |
| | pcaI | 3-oxoadipate CoA-transferase subunit A; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation. (231 aa) |
| | pcaJ | 3-oxoadipate CoA-transferase subunit A; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation. (213 aa) |
| | ligA | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (776 aa) |
| | PP_4277 | Transcriptional regulator, GntR family. (219 aa) |
| | PP_4283 | Transcriptional regulator, GntR family. (251 aa) |
| | PP_4345 | Transcriptional regulator, GntR family. (230 aa) |
| | PP_4461 | Major facilitator family transporter. (430 aa) |
| | PP_4462 | Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (221 aa) |
| | PP_4463 | Carbon-nitrogen hydrolase family protein. (273 aa) |
| | PP_4578 | Major facilitator family transporter. (428 aa) |
| | pcaG | Protocatechuate 3,4-dioxygenase alpha chain; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism). (201 aa) |
| | pcaH | Protocatechuate 3,4-dioxygenase beta chain; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation. (239 aa) |
| | pdhR | DNA-binding transcriptional dual regulator, LldR-L-lactate; Function experimentally demonstrated in the studied genus; regulator; Energymetabolism : Aerobic. (255 aa) |
| | gudD | D-glucarate dehydratase / L-idarate epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (448 aa) |
| | PP_4758 | Major facilitator family transporter. (455 aa) |
| | PP_4759 | Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator; Regulatory functions. (233 aa) |
| | ligB | DNA ligase B; Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily. (566 aa) |
| | rnk | Regulator of nucleotide diphosphokinase; Function of homologous gene experimentally demonstrated in an other organism; regulator. (136 aa) |
| | PP_5224 | Homologs of previously reported genes of unknown function. (74 aa) |
| | PP_5226 | Lipoprotein, Lppl family. (72 aa) |
| | PP_5229 | Homologs of previously reported genes of unknown function; Unknown function. (236 aa) |
| | xerC | Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (299 aa) |
| | PP_5654 | Putative phosphotriesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (138 aa) |
