STRINGSTRING
PP_0163 PP_0163 PP_0620 PP_0620 PP_0968 PP_0968 PP_0969 PP_0969 PP_0970 PP_0970 PP_0971 PP_0971 PP_0972 PP_0972 PP_1255 PP_1255 PP_1256 PP_1256 PP_1257 PP_1257 prpA prpA PP_1697 PP_1697 PP_1707 PP_1707 PP_1708 PP_1708 PP_1710 PP_1710 PP_1876 PP_1876 PP_2066 PP_2066 PP_2252 PP_2252 PP_2253 PP_2253 PP_2254 PP_2254 PP_2256 PP_2256 PP_2333 PP_2333 PP_2585 PP_2585 PP_2662 PP_2662 PP_2830 PP_2830 fucD fucD PP_2834 PP_2834 PP_2835 PP_2835 PP_2836 PP_2836 PP_2837 PP_2837 PP_2838 PP_2838 PP_2839 PP_2839 PP_3180 PP_3180 kdgD kdgD gudP gudP garD garD PP_3602 PP_3602 PP_4277 PP_4277 PP_4283 PP_4283 PP_4345 PP_4345 pdhR pdhR gudD gudD PP_4758 PP_4758 PP_4759 PP_4759
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PP_0163Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (229 aa)
PP_0620GntR family transcriptional regulator. (254 aa)
PP_0968Homologs of previously reported genes of unknown function. (413 aa)
PP_0969Transcriptional regulator, GntR family. (216 aa)
PP_0970Cyanate MFS transporter. (434 aa)
PP_0971Homologs of previously reported genes of unknown function. (158 aa)
PP_0972UPF0213 protein PP_0972; Belongs to the UPF0213 family. (105 aa)
PP_1255Putative cis-4-hydroxy-D-proline oxidase; No homology to any previously reported sequences; putative enzyme; Energymetabolism : Amino acids and amines. (415 aa)
PP_1256Putative alpha-ketoglutarate semialdehyde dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Amino acids and amines. (525 aa)
PP_1257Putative 1-pyrroline-4-hydroxy-2-carboxylate deaminase; No homology to any previously reported sequences; putative enzyme; Energymetabolism : Amino acids and amines; Belongs to the DapA family. (315 aa)
prpA4-hydroxyproline epimerase; Catalyzes the reversible epimerization of cis-4-hydroxy-D- proline (c4DHyp) to trans-4-hydroxy-L-proline (t4LHyp). May be involved in a degradation pathway that allows P.putida strain KT2440 to grow on either epimer of 4-hydroxyproline, c4DHyp and t4LHyp, as the sole carbon and nitrogen source. Does not exhibit measureable racemase activity in vitro with any of the 19 natural chiral amino acid enantiomers. (308 aa)
PP_1697Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator; Transcription. (243 aa)
PP_1707D-isomer specific 2-hydroxyacid dehydrogenase family protein. (316 aa)
PP_1708Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)
PP_1710MFS transporter, phthalate permease family. (446 aa)
PP_1876Putative ATP/GTP-binding protein of the AAA+ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (295 aa)
PP_2066Transcriptional regulator, GntR family. (254 aa)
PP_2252Homologs of previously reported genes of unknown function. (349 aa)
PP_2253Transcriptional regulator, GntR family. (222 aa)
PP_2254Transcriptional regulator, GntR family. (232 aa)
PP_2256Transcriptional regulator, Cro/CI family. (104 aa)
PP_2333GntR family transcriptional regulator. (238 aa)
PP_2585Alpha-ketoglutaric semialdehyde dehydrogenase. (526 aa)
PP_2662Homologs of previously reported genes of unknown function. (395 aa)
PP_2830Major facilitator family transporter. (450 aa)
fucDL-fuconate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Pentose phosphate pathway; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (411 aa)
PP_2834Putative D-galactarate dehydratase/Altronate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Sugars. (513 aa)
PP_2835Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Biologicalprocesses : Scavenge (Catabolism); Belongs to the LDH2/MDH2 oxidoreductase family. (344 aa)
PP_2836Putative 2-keto-3-deoxyxylonate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Sugars. (405 aa)
PP_2837Putative uronate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (436 aa)
PP_2838Conserved protein of unknown function; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (549 aa)
PP_2839Homologs of previously reported genes of unknown function. (762 aa)
PP_3180Smp-30/Cgr1 family protein. (346 aa)
kdgD5-dehydro-4-deoxyglucarate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the DapA family. (303 aa)
gudPGlucarate transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Energy metabolism. (454 aa)
garDGalactarate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation. (517 aa)
PP_36022,5-dioxovalerate dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism. (526 aa)
PP_4277Transcriptional regulator, GntR family. (219 aa)
PP_4283Transcriptional regulator, GntR family. (251 aa)
PP_4345Transcriptional regulator, GntR family. (230 aa)
pdhRDNA-binding transcriptional dual regulator, LldR-L-lactate; Function experimentally demonstrated in the studied genus; regulator; Energymetabolism : Aerobic. (255 aa)
gudDD-glucarate dehydratase / L-idarate epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (448 aa)
PP_4758Major facilitator family transporter. (455 aa)
PP_4759Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator; Regulatory functions. (233 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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