STRINGSTRING
PP_1255 PP_1255 PP_1256 PP_1256 PP_1257 PP_1257 prpA prpA PP_2585 PP_2585 PP_2830 PP_2830 fucD fucD PP_2834 PP_2834 PP_2835 PP_2835 PP_2836 PP_2836 PP_2837 PP_2837 PP_2838 PP_2838 PP_2839 PP_2839 PP_3180 PP_3180 kdgD kdgD gudP gudP garD garD PP_3602 PP_3602 gudD gudD PP_4758 PP_4758
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PP_1255Putative cis-4-hydroxy-D-proline oxidase; No homology to any previously reported sequences; putative enzyme; Energymetabolism : Amino acids and amines. (415 aa)
PP_1256Putative alpha-ketoglutarate semialdehyde dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Amino acids and amines. (525 aa)
PP_1257Putative 1-pyrroline-4-hydroxy-2-carboxylate deaminase; No homology to any previously reported sequences; putative enzyme; Energymetabolism : Amino acids and amines; Belongs to the DapA family. (315 aa)
prpA4-hydroxyproline epimerase; Catalyzes the reversible epimerization of cis-4-hydroxy-D- proline (c4DHyp) to trans-4-hydroxy-L-proline (t4LHyp). May be involved in a degradation pathway that allows P.putida strain KT2440 to grow on either epimer of 4-hydroxyproline, c4DHyp and t4LHyp, as the sole carbon and nitrogen source. Does not exhibit measureable racemase activity in vitro with any of the 19 natural chiral amino acid enantiomers. (308 aa)
PP_2585Alpha-ketoglutaric semialdehyde dehydrogenase. (526 aa)
PP_2830Major facilitator family transporter. (450 aa)
fucDL-fuconate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Pentose phosphate pathway; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (411 aa)
PP_2834Putative D-galactarate dehydratase/Altronate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Sugars. (513 aa)
PP_2835Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Biologicalprocesses : Scavenge (Catabolism); Belongs to the LDH2/MDH2 oxidoreductase family. (344 aa)
PP_2836Putative 2-keto-3-deoxyxylonate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Sugars. (405 aa)
PP_2837Putative uronate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (436 aa)
PP_2838Conserved protein of unknown function; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (549 aa)
PP_2839Homologs of previously reported genes of unknown function. (762 aa)
PP_3180Smp-30/Cgr1 family protein. (346 aa)
kdgD5-dehydro-4-deoxyglucarate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the DapA family. (303 aa)
gudPGlucarate transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Energy metabolism. (454 aa)
garDGalactarate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation. (517 aa)
PP_36022,5-dioxovalerate dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism. (526 aa)
gudDD-glucarate dehydratase / L-idarate epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (448 aa)
PP_4758Major facilitator family transporter. (455 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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