STRINGSTRING
gabP-I gabP-I yacG yacG PP_0658 PP_0658 mmuP mmuP PP_0796 PP_0796 PP_0797 PP_0797 ytnA ytnA PP_1102 PP_1102 PP_1103 PP_1103 PP_1104 PP_1104 PP_1105 PP_1105 PP_1106 PP_1106 quiP quiP PP_1201 PP_1201 PP_1202 PP_1202 yveA yveA PP_1633 PP_1633 yfiP yfiP PP_1843 PP_1843 PP_2236 PP_2236 PP_2237 PP_2237 PP_2238 PP_2238 PP_2586 PP_2586 PP_2721 PP_2721 PP_2722 PP_2722 yhdF yhdF PP_2724 PP_2724 PP_2802 PP_2802 treSA treSA PP_2923 PP_2923 PP_2924 PP_2924 PP_3214 PP_3214 PP_3241 PP_3241 ku ku PP_3256 PP_3256 PP_3257 PP_3257 PP_3258 PP_3258 PP_3259 PP_3259 PP_3261 PP_3261 PP_3262 PP_3262 ybhN ybhN clsB clsB ybhP-I ybhP-I PP_3266 PP_3266 PP_3306 PP_3306 PP_3307 PP_3307 PP_3613 PP_3613 PP_3614 PP_3614 PP_3615 PP_3615 PP_3616 PP_3616 PP_3617 PP_3617 PP_3618 PP_3618 PP_3619 PP_3619 PP_3831 PP_3831 PP_3962 PP_3962 PP_4040 PP_4040 PP_4041 PP_4041 PP_4044 PP_4044 glgA glgA treZ treZ malQ malQ treY treY PP_4054 PP_4054 glgX glgX ybhP-II ybhP-II glgB glgB treSB treSB glgE glgE PP_4061 PP_4061 PP_4406 PP_4406 PP_4407 PP_4407 gabP-V gabP-V glgP glgP PP_5276 PP_5276 PP_5297 PP_5297 PP_5363 PP_5363 clsA clsA PP_5438 PP_5438 PP_5592 PP_5592 PP_5595 PP_5595
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gabP-IGamma-aminobutyrate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter. (461 aa)
yacGDNA gyrase inhibitor YacG; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. (66 aa)
PP_0658Homocysteine S-methyltransferase family protein. (311 aa)
mmuPS-methyl-L-methionine transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family. (479 aa)
PP_0796Homologs of previously reported genes of unknown function. (95 aa)
PP_0797Homologs of previously reported genes of unknown function. (179 aa)
ytnAUncharacterized amino acid permease YtnA. (472 aa)
PP_1102Homologs of previously reported genes of unknown function. (216 aa)
PP_1103ATP-dependent helicase, DEAD box family. (816 aa)
PP_1104AotO-related protein. (371 aa)
PP_1105Putative DNA ligase, ATP-dependent; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (552 aa)
PP_1106Homologs of previously reported genes of unknown function. (338 aa)
quiPAcyl-homoserine lactone acylase QuiP; Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of seven or more carbons in length) (By similarity). (813 aa)
PP_1201Homologs of previously reported genes of unknown function. (430 aa)
PP_1202Putative enzyme involved in modification of phospholipids; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (880 aa)
yveAAspartate-proton symporter. (537 aa)
PP_1633Homologs of previously reported genes of unknown function. (139 aa)
yfiPConserved protein; Homologs of previously reported genes of unknown function; Unknown function. (236 aa)
PP_1843Mg2+/Co2+ transporter. (323 aa)
PP_2236Putative hydrolase of the alpha/beta superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (256 aa)
PP_2237Homologs of previously reported genes of unknown function. (372 aa)
PP_2238Putative metallopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides. (633 aa)
PP_2586Putative amino acid transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins. (460 aa)
PP_2721Homologs of previously reported genes of unknown function. (116 aa)
PP_2722Homologs of previously reported genes of unknown function. (154 aa)
yhdFUncharacterized oxidoreductase YhdF. (285 aa)
PP_2724Homologs of previously reported genes of unknown function. (174 aa)
PP_2802Amino acid permease family protein. (443 aa)
treSATrehalose synthase A; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Sugars. (688 aa)
PP_2923Homologs of previously reported genes of unknown function. (285 aa)
PP_2924Homologs of previously reported genes of unknown function. (416 aa)
PP_3214Homologs of previously reported genes of unknown function. (268 aa)
PP_3241Homologs of previously reported genes of unknown function. (166 aa)
kuNon-homologous end joining protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (273 aa)
PP_3256Glycosyl transferase, group 2 family protein. (219 aa)
PP_3257Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (199 aa)
PP_3258Homologs of previously reported genes of unknown function. (251 aa)
PP_3259Acyl-CoA dehydrogenase-related protein. (347 aa)
PP_3261Homologs of previously reported genes of unknown function. (133 aa)
PP_3262Putative Metallothionein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (74 aa)
ybhNPhospholipid modification enzyme; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (317 aa)
clsBCardiolipin synthase 2; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. (400 aa)
ybhP-IPutative phosphohydrolase of unknown function; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Biologicalprocesses : Scavenge (Catabolism). (257 aa)
PP_3266Homologs of previously reported genes of unknown function. (350 aa)
PP_3306Homologs of previously reported genes of unknown function. (68 aa)
PP_3307Homologs of previously reported genes of unknown function. (126 aa)
PP_3613L-sorbosone dehydrogenase. (430 aa)
PP_3614Homologs of previously reported genes of unknown function; Unknown function. (142 aa)
PP_3615Homologs of previously reported genes of unknown function. (128 aa)
PP_3616Homologs of previously reported genes of unknown function. (996 aa)
PP_3617Homologs of previously reported genes of unknown function. (298 aa)
PP_3618Homologs of previously reported genes of unknown function. (297 aa)
PP_3619Homologs of previously reported genes of unknown function. (298 aa)
PP_3831Homologs of previously reported genes of unknown function. (340 aa)
PP_3962Homologs of previously reported genes of unknown function; Unknown function. (236 aa)
PP_4040Putative enzyme of the glyoxalase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (118 aa)
PP_4041Putative glycoside hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Biosynthesis and degradation of polysaccharides. (598 aa)
PP_4044Homologs of previously reported genes of unknown function. (67 aa)
glgAGlycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (519 aa)
treZMalto-oligosyltrehalose trehalohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Biosynthesis and degradation of polysaccharides. (580 aa)
malQ4-alpha-glucanotransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Biosynthesis and degradation of polysaccharides. (689 aa)
treYMaltooligosyl trehalose synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Biosynthesis and degradation of polysaccharides. (924 aa)
PP_4054Homologs of previously reported genes of unknown function. (94 aa)
glgXGlycogen debranching enzyme; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism; Belongs to the glycosyl hydrolase 13 family. (717 aa)
ybhP-IIPutative phosphohydrolase of unknown function; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Biologicalprocesses : Scavenge (Catabolism). (264 aa)
glgB1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (736 aa)
treSBFused trehalose synthase B/maltokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Biosynthesis and degradation of polysaccharides. (1106 aa)
glgEAlpha-1,4-glucan:maltose-1-phosphate maltosyltransferase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. (661 aa)
PP_4061Homologs of previously reported genes of unknown function. (53 aa)
PP_4406Homologs of previously reported genes of unknown function. (175 aa)
PP_4407Putative Gamma-aminobutyrate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (460 aa)
gabP-VGamma-aminobutyrate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter. (463 aa)
glgPGlycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (816 aa)
PP_5276Phospholipase D family protein. (517 aa)
PP_5297Putative Amino acid transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (535 aa)
PP_5363Homologs of previously reported genes of unknown function. (175 aa)
clsACardiolipin synthase 1; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. (481 aa)
PP_5438Conserved protein of unknown function; Doubtful CDS. (58 aa)
PP_5592Homologs of previously reported genes of unknown function; Unknown function. (83 aa)
PP_5595Homologs of previously reported genes of unknown function; Unknown function. (138 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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