22 items (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hmgR	Hmg transcriptional repressor; Function experimentally demonstrated in the studied species; regulator; Energy metabolism. (277 aa)
	PP_2259	Putative sigma-54 dependent transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (591 aa)
	PP_2356	Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (755 aa)
	PP_2505	GAF domain/GGDEF domain protein. (345 aa)
	PP_2599	Chemotaxis sensory transducer family protein. (796 aa)
	PP_5242	Sensor histidine kinase/GAF domain protein. (1682 aa)
	PP_5229	Homologs of previously reported genes of unknown function; Unknown function. (236 aa)
	ptsP	Phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins); Function of homologous gene experimentally demonstrated in an other organism; regulator; Energy metabolism; Belongs to the PEP-utilizing enzyme family. (759 aa)
	pcaR	Transcription regulatory protein (pca regulon); Function experimentally demonstrated in the studied species; regulator; Energy metabolism. (291 aa)
	norR	DNA-binding transcriptional dual regulator (NO); Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription. (518 aa)
	PP_2601	Transcriptional regulator, IclR family. (258 aa)
	PP_0337	Sensory box protein. (896 aa)
	PP_2609	Transcriptional regulator, IclR family. (256 aa)
	PP_3319	Sensory box protein/GGDEF domain protein. (733 aa)
	PP_3364	Response regulator. (847 aa)
	PP_3467	Sigma-54 dependent transcriptional regulator. (636 aa)
	acoR	Acetoin catabolism regulatory protein. (617 aa)
	msrC	Free methionine-(R)-sulfoxide reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknown function. (160 aa)
	PP_3651	Sensor histidine kinase/response regulator. (727 aa)
	PP_3761	Sensor histidine kinase/response regulator. (1155 aa)
	kdpD	Sensor protein; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription. (884 aa)
	PP_0546	Sigma-54 dependent transcriptional regulator; Function of strongly homologous gene; regulator; Regulatory functions. (671 aa)

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_0337	PP_2356	PP_0337	PP_2356	Sensory box protein.	Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.475
PP_0337	PP_2505	PP_0337	PP_2505	Sensory box protein.	GAF domain/GGDEF domain protein.	0.809
PP_0337	PP_2599	PP_0337	PP_2599	Sensory box protein.	Chemotaxis sensory transducer family protein.	0.653
PP_0337	PP_3319	PP_0337	PP_3319	Sensory box protein.	Sensory box protein/GGDEF domain protein.	0.815
PP_0337	PP_3364	PP_0337	PP_3364	Sensory box protein.	Response regulator.	0.667
PP_0337	PP_3651	PP_0337	PP_3651	Sensory box protein.	Sensor histidine kinase/response regulator.	0.661
PP_0337	PP_3761	PP_0337	PP_3761	Sensory box protein.	Sensor histidine kinase/response regulator.	0.864
PP_0337	PP_5242	PP_0337	PP_5242	Sensory box protein.	Sensor histidine kinase/GAF domain protein.	0.560
PP_2356	PP_0337	PP_2356	PP_0337	Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensory box protein.	0.475
PP_2356	PP_2505	PP_2356	PP_2505	Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	GAF domain/GGDEF domain protein.	0.461
PP_2356	PP_3319	PP_2356	PP_3319	Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensory box protein/GGDEF domain protein.	0.555
PP_2356	PP_3364	PP_2356	PP_3364	Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Response regulator.	0.432
PP_2356	PP_3651	PP_2356	PP_3651	Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensor histidine kinase/response regulator.	0.819
PP_2356	PP_3761	PP_2356	PP_3761	Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensor histidine kinase/response regulator.	0.787
PP_2356	PP_5242	PP_2356	PP_5242	Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensor histidine kinase/GAF domain protein.	0.541
PP_2505	PP_0337	PP_2505	PP_0337	GAF domain/GGDEF domain protein.	Sensory box protein.	0.809
PP_2505	PP_2356	PP_2505	PP_2356	GAF domain/GGDEF domain protein.	Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.461
PP_2505	PP_2599	PP_2505	PP_2599	GAF domain/GGDEF domain protein.	Chemotaxis sensory transducer family protein.	0.617
PP_2505	PP_3319	PP_2505	PP_3319	GAF domain/GGDEF domain protein.	Sensory box protein/GGDEF domain protein.	0.714
PP_2505	PP_3364	PP_2505	PP_3364	GAF domain/GGDEF domain protein.	Response regulator.	0.556