STRINGSTRING
PP_2662 PP_2662 PP_2313 PP_2313 PP_2042 PP_2042 sbcD sbcD pgi-I pgi-I fklB-II fklB-II PP_0990 PP_0990 PP_0765 PP_0765 fklB-I fklB-I katA katA fkl fkl katE katE PP_5539 PP_5539 pdxY pdxY xpt xpt pncB pncB pgi-II pgi-II flgL flgL fliC fliC PP_4313 PP_4313 pucM pucM apt apt serS serS yccA yccA yphA yphA pgm pgm PP_3563 PP_3563 PP_3464 PP_3464 hemBB hemBB PP_3200 PP_3200 hemB hemB PP_2887 PP_2887 PP_2811 PP_2811 PP_2702 PP_2702 PP_2400 PP_2400
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PP_2662Homologs of previously reported genes of unknown function. (395 aa)
PP_2313Homologs of previously reported genes of unknown function. (145 aa)
PP_2042Homologs of previously reported genes of unknown function; Unknown function. (617 aa)
sbcDExonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (412 aa)
pgi-IGlucose-6-phosphate isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (554 aa)
fklB-IIFKBP-type peptidyl-prolyl cis-trans isomerase; Function of strongly homologous gene; enzyme; Proteinfate : Protein folding and stabilization. (250 aa)
PP_0990DoxX family protein. (128 aa)
PP_0765Homologs of previously reported genes of unknown function. (628 aa)
fklB-IFKBP-type peptidyl-prolyl cis-trans isomerase; Function of strongly homologous gene; enzyme; Proteinfate : Protein folding and stabilization. (205 aa)
katACatalase; Belongs to the catalase family. (479 aa)
fklPutative FKBP-type 25 kDa peptidyl-prolyl cis-trans isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (220 aa)
katEHydroperoxidase - self catalytic heme d synthase; Serves to protect cells from the toxic effects of hydrogen peroxide. (711 aa)
PP_5539Homologs of previously reported genes of unknown function; Unknown function. (386 aa)
pdxYPyridoxamine kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP. (290 aa)
xptXanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. (190 aa)
pncBNicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family. (402 aa)
pgi-IIGlucose-6-phosphate isomerase; Function of strongly homologous gene; enzyme. (554 aa)
flgLFlagellar hook-associated protein FlgL. (521 aa)
fliCFlagellin, filament structural protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (687 aa)
PP_4313Putative peptidylprolyl isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (112 aa)
pucM5-hydroxyisourate hydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (117 aa)
aptAdenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. (182 aa)
serSSerine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (426 aa)
yccASubstrate or modulator of FtsH-mediated proteolysis; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transport and binding proteins; Belongs to the BI1 family. (223 aa)
yphAInner membrane protein of unknown function; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Unknown function. (137 aa)
pgmPhosphoglucomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Sugars. (545 aa)
PP_3563Homologs of previously reported genes of unknown function. (283 aa)
PP_3464Homologs of previously reported genes of unknown function. (437 aa)
hemBBPorphobilinogen synthase (delta-aminolevulinic acid dehydratase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ALAD family. (333 aa)
PP_3200Homologs of previously reported genes of unknown function. (570 aa)
hemB5-aminolevulinate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Heme, porphyrin, and cobalamin; Belongs to the ALAD family. (324 aa)
PP_2887Catalase-related peroxidase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. (350 aa)
PP_2811Homologs of previously reported genes of unknown function. (548 aa)
PP_2702Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (376 aa)
PP_2400Homologs of previously reported genes of unknown function. (162 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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