10 items (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PP_2589	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family. (497 aa)
	mmsA-I	Methylmalonate-semialdehyde dehydrogenase; Function of strongly homologous gene; enzyme. (497 aa)
	potA	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (374 aa)
	gabD-I	Succinate-semialdehyde dehydrogenase (NADP+); Catalyzes the conversion of 5-oxopentanoate (glutarate semialdehyde) to glutarate. Involved in L-lysine degradation. (480 aa)
	spuF	Spermidine/putrescine ABC transporter - ATP binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (380 aa)
	mmsA-II	Methylmalonate-semialdehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism). (508 aa)
	gabD-II	Succinate-semialdehyde dehydrogenase (NADP+); Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines. (490 aa)
	PP_3646	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family. (493 aa)
	sad-II	NAD+-dependent succinate semialdehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism). (461 aa)
	PP_2694	Aldehyde dehydrogenase family protein. (480 aa)

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_2589	mmsA-I	PP_2589	PP_0597	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	Methylmalonate-semialdehyde dehydrogenase; Function of strongly homologous gene; enzyme.	0.409
PP_2589	spuF	PP_2589	PP_5179	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	Spermidine/putrescine ABC transporter - ATP binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.436
PP_3646	spuF	PP_3646	PP_5179	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	Spermidine/putrescine ABC transporter - ATP binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.436
gabD-I	gabD-II	PP_0213	PP_4422	Succinate-semialdehyde dehydrogenase (NADP+); Catalyzes the conversion of 5-oxopentanoate (glutarate semialdehyde) to glutarate. Involved in L-lysine degradation.	Succinate-semialdehyde dehydrogenase (NADP+); Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines.	0.904
gabD-II	gabD-I	PP_4422	PP_0213	Succinate-semialdehyde dehydrogenase (NADP+); Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines.	Succinate-semialdehyde dehydrogenase (NADP+); Catalyzes the conversion of 5-oxopentanoate (glutarate semialdehyde) to glutarate. Involved in L-lysine degradation.	0.904
mmsA-I	PP_2589	PP_0597	PP_2589	Methylmalonate-semialdehyde dehydrogenase; Function of strongly homologous gene; enzyme.	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	0.409
mmsA-I	mmsA-II	PP_0597	PP_4667	Methylmalonate-semialdehyde dehydrogenase; Function of strongly homologous gene; enzyme.	Methylmalonate-semialdehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).	0.905
mmsA-II	mmsA-I	PP_4667	PP_0597	Methylmalonate-semialdehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).	Methylmalonate-semialdehyde dehydrogenase; Function of strongly homologous gene; enzyme.	0.905
potA	spuF	PP_0411	PP_5179	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter - ATP binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.424
spuF	PP_2589	PP_5179	PP_2589	Spermidine/putrescine ABC transporter - ATP binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	0.436
spuF	PP_3646	PP_5179	PP_3646	Spermidine/putrescine ABC transporter - ATP binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	0.436
spuF	potA	PP_5179	PP_0411	Spermidine/putrescine ABC transporter - ATP binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.424