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lhgO lhgO gcdH gcdH PP_0159 PP_0159 gabD-I gabD-I gabT gabT davA davA davB davB PP_0384 PP_0384 nadC nadC hpf hpf PP_1109 PP_1109 PP_1661 PP_1661 PP_1778 PP_1778 PP_2088 PP_2088 PP_2868 PP_2868 csiD csiD PP_3394 PP_3394 PP_3395 PP_3395 PP_3592 PP_3592 PP_3603 PP_3603 PP_3649 PP_3649 PP_4018 PP_4018 PP_4108 PP_4108 ydiJ ydiJ amaA amaA amaB amaB ydcJ ydcJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lhgOL-2-hydroxyglutarate oxidase; Function experimentally demonstrated in the studied genus; enzyme; Energy metabolism. (416 aa)
gcdHglutaryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism. (393 aa)
PP_0159Putative CoA-transferase family III; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity; Belongs to the CoA-transferase III family. (406 aa)
gabD-ISuccinate-semialdehyde dehydrogenase (NADP+); Catalyzes the conversion of 5-oxopentanoate (glutarate semialdehyde) to glutarate. Involved in L-lysine degradation. (480 aa)
gabT4-aminobutyrate aminotransferase; Catalyzes the conversion of 5-aminovalerate to 5- oxopentanoate. (425 aa)
davA5-aminopentanamidase; Function experimentally demonstrated in the studied strain; enzyme; Energymetabolism : Amino acids and amines. (264 aa)
davBLysine 2-monooxygenase; Function experimentally demonstrated in the studied strain; enzyme; Energymetabolism : Amino acids and amines. (560 aa)
PP_0384Transcriptional regulator, AsnC family. (153 aa)
nadCQuinolinate phosphoribosyltransferase (decarboxylating) monomer; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Pyridine nucleotides; Belongs to the NadC/ModD family. (282 aa)
hpfRibosome hibernation promoting factor; During stationary phase, promotes and stabilizes dimerization of 70S ribosomes by the ribosome modulation factor (RMF), leading to the formation of inactive 100S ribosomes. Belongs to the HPF/YfiA ribosome-associated protein family. Short HPF subfamily. (102 aa)
PP_1109Transcriptional regulator, GntR family. (446 aa)
PP_1661Putative Dehydrogenase subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (752 aa)
PP_1778Lipopolysaccharide ABC export system, permease protein. (264 aa)
PP_2088RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily. (196 aa)
PP_2868Transcriptional regulator, Cro/CI family. (199 aa)
csiDCarbon starvation induced protein; Acts as an alpha-ketoglutarate-dependent dioxygenase catalyzing hydroxylation of glutarate (GA) to L-2-hydroxyglutarate (L2HG). Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate. (325 aa)
PP_3394Putative 3-hydroxy-3-methylglutaryl-CoA lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the alpha-IPM synthase/homocitrate synthase family. (309 aa)
PP_3395Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (321 aa)
PP_3592Transcriptional regulator, RpiR family; Function experimentally demonstrated in the studied strain; regulator; Regulatory functions. (307 aa)
PP_3603Transcriptional regulator, GntR family. (254 aa)
PP_3649Transcriptional regulator, GntR family. (250 aa)
PP_4018Acetyltransferase, GNAT family. (142 aa)
PP_4108Putative 4-aminobutyrate aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (416 aa)
ydiJPutative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (1006 aa)
amaAL-pipecolate oxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines. (432 aa)
amaBL-piperidine-6-carboxylate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines; Belongs to the aldehyde dehydrogenase family. (496 aa)
ydcJMetalloprotein, putative enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknown function. (464 aa)
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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