22 items (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gcd	Quinoprotein glucose dehydrogenase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Sugars. (803 aa)
	bglX	Periplasmic beta-D-glucoside glucohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism; Belongs to the glycosyl hydrolase 3 family. (763 aa)
	phoQ	Sensor protein; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription. (448 aa)
	phoP	Two component system DNA-binding transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription. (225 aa)
	iscU	Scaffold protein involved in iron-sulfur cluster assembly; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. (128 aa)
	prlC	Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides. (683 aa)
	phoU	Phosphate transport-associated protein; Plays a role in the regulation of phosphate uptake. (256 aa)
	cheR	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. Methylates the McpS chemotaxis receptor. (275 aa)
	flgD	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein. (233 aa)
	flgL	Flagellar hook-associated protein FlgL. (521 aa)
	fleQ	Transcriptional regulator FleQ. (491 aa)
	fliL	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (165 aa)
	fliN	C-ring protein of the flagellar basal body; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. (161 aa)
	fliA	RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (246 aa)
	cheZ	Protein phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). (262 aa)
	cheA	Chemotaxis histidine kinase CheA. (747 aa)
	gor	Glutathione reductase (NADPH); Maintains high levels of reduced glutathione. (451 aa)
	PP_3818	Periplamic phosphate-binding protein. (435 aa)
	pstA	Phosphate ABC transporter; Function experimentally demonstrated in the studied genus; transporter; Centralintermediarymetabolism : Phosphorus compounds. (297 aa)
	pstC	Phosphate ABC transporter; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (322 aa)
	pstS	Phosphate ABC transporter; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (348 aa)
	ubiC	Probable chorismate pyruvate-lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. (185 aa)

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_3818	iscU	PP_3818	PP_0843	Periplamic phosphate-binding protein.	Scaffold protein involved in iron-sulfur cluster assembly; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.	0.533
PP_3818	phoU	PP_3818	PP_5325	Periplamic phosphate-binding protein.	Phosphate transport-associated protein; Plays a role in the regulation of phosphate uptake.	0.800
PP_3818	pstA	PP_3818	PP_2658	Periplamic phosphate-binding protein.	Phosphate ABC transporter; Function experimentally demonstrated in the studied genus; transporter; Centralintermediarymetabolism : Phosphorus compounds.	0.977
PP_3818	pstC	PP_3818	PP_2657	Periplamic phosphate-binding protein.	Phosphate ABC transporter; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.964
PP_3818	pstS	PP_3818	PP_2656	Periplamic phosphate-binding protein.	Phosphate ABC transporter; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.983
cheA	cheR	PP_4338	PP_4392	Chemotaxis histidine kinase CheA.	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. Methylates the McpS chemotaxis receptor.	0.985
cheA	cheZ	PP_4338	PP_4339	Chemotaxis histidine kinase CheA.	Protein phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).	0.999
cheA	fleQ	PP_4338	PP_4373	Chemotaxis histidine kinase CheA.	Transcriptional regulator FleQ.	0.654
cheA	flgD	PP_4338	PP_4389	Chemotaxis histidine kinase CheA.	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	0.861
cheA	flgL	PP_4338	PP_4380	Chemotaxis histidine kinase CheA.	Flagellar hook-associated protein FlgL.	0.858
cheA	fliA	PP_4338	PP_4341	Chemotaxis histidine kinase CheA.	RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.	0.865
cheA	fliL	PP_4338	PP_4359	Chemotaxis histidine kinase CheA.	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.764
cheA	fliN	PP_4338	PP_4357	Chemotaxis histidine kinase CheA.	C-ring protein of the flagellar basal body; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.	0.946
cheR	cheA	PP_4392	PP_4338	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. Methylates the McpS chemotaxis receptor.	Chemotaxis histidine kinase CheA.	0.985
cheR	cheZ	PP_4392	PP_4339	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. Methylates the McpS chemotaxis receptor.	Protein phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).	0.966
cheR	flgD	PP_4392	PP_4389	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. Methylates the McpS chemotaxis receptor.	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	0.745
cheR	flgL	PP_4392	PP_4380	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. Methylates the McpS chemotaxis receptor.	Flagellar hook-associated protein FlgL.	0.734
cheR	fliA	PP_4392	PP_4341	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. Methylates the McpS chemotaxis receptor.	RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.	0.726
cheR	fliL	PP_4392	PP_4359	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. Methylates the McpS chemotaxis receptor.	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.400
cheR	fliN	PP_4392	PP_4357	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. Methylates the McpS chemotaxis receptor.	C-ring protein of the flagellar basal body; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.	0.822