STRINGSTRING
XF_0243 XF_0243 XF_0244 XF_0244 XF_0245 XF_0245 XF_0246 XF_0246 XF_0247 XF_0247 XF_0248 XF_0248 XF_0249 XF_0249 XF_0250 XF_0250 XF_0251 XF_0251 XF_0300 XF_0300 XF_0301 XF_0301 XF_0302 XF_0302 XF_0662 XF_0662 XF_0663 XF_0663 XF_0664 XF_0664 XF_0665 XF_0665 XF_0666 XF_0666 XF_0667 XF_0667 XF_0668 XF_0668 XF_0753 XF_0753 XF_0754 XF_0754 XF_1011 XF_1011 XF_1216 XF_1216 XF_1220 XF_1220 XF_1354 XF_1354 XF_1489 XF_1489 XF_1641 XF_1641 uppP uppP XF_2080 XF_2080 XF_2081 XF_2081 XF_2082 XF_2082 XF_2083 XF_2083 XF_2084 XF_2084 XF_2085 XF_2085 XF_2093 XF_2093 XF_2094 XF_2094 XF_2384 XF_2384 XF_2385 XF_2385 XF_2386 XF_2386 XF_2397 XF_2397 XF_2398 XF_2398 XF_2399 XF_2399 XF_2400 XF_2400 XF_2401 XF_2401 XF_2402 XF_2402 XF_2403 XF_2403 XF_2404 XF_2404 XF_2405 XF_2405 XF_2406 XF_2406 XF_2407 XF_2407 XF_2408 XF_2408 XF_2584 XF_2584 XF_2585 XF_2585 XF_2586 XF_2586 XF_2587 XF_2587 XF_2679 XF_2679 XF_2750 XF_2750 XF_2751 XF_2751 XF_2752 XF_2752 XF_2753 XF_2753 XF_2754 XF_2754 XF_2755 XF_2755 XF_2756 XF_2756 XF_2757 XF_2757 XF_2758 XF_2758 XF_2759 XF_2759
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XF_0243Acriflavin resistance protein; Similar to GI|2632985 (percent identity: 23 %/query alignment coverage: 102.7 %/subject alignment coverage: 99.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1027 aa)
XF_0244Membrane fusion protein; Similar to GI|1399757 (percent identity: 25 %/query alignment coverage: 100.0 %/subject alignment coverage: 95.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (369 aa)
XF_0245Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (52 aa)
XF_0246Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (54 aa)
XF_0247Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (111 aa)
XF_0248Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (130 aa)
XF_0249Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (136 aa)
XF_0250Conserved hypothetical protein; Similar to GI|5457510 (percent identity: 25 %/query alignment coverage: 96.1 %/subject alignment coverage: 99.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -18. (304 aa)
XF_0251Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (56 aa)
XF_0300Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (78 aa)
XF_0301Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (100 aa)
XF_0302Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (95 aa)
XF_0662Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (64 aa)
XF_0663Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (171 aa)
XF_0664Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (153 aa)
XF_0665Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (83 aa)
XF_0666Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (181 aa)
XF_0667Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (141 aa)
XF_0668Hemolysin-type calcium binding protein; Similar to SP|P55127 (percent identity: 32 %/query alignment coverage: 86.8 %/subject alignment coverage: 57.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (1208 aa)
XF_0753Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (61 aa)
XF_0754Virulence protein; Similar to GI|896249 (percent identity: 39 %/query alignment coverage: 86.5 %/subject alignment coverage: 45.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (237 aa)
XF_1011Hemolysin-type calcium binding protein; Similar to SP|P55127 (percent identity: 30 %/query alignment coverage: 78.2 %/subject alignment coverage: 69.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (1636 aa)
XF_1216Colicin V secretion protein; Similar to SP|P22519 (percent identity: 25 %/query alignment coverage: 97.1 %/subject alignment coverage: 98.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (420 aa)
XF_1220Colicin V secretion ABC transporter ATP-binding protein; Similar to SP|P22520 (percent identity: 40 %/query alignment coverage: 95.5 %/subject alignment coverage: 96.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (707 aa)
XF_1354Transcriptional regulator (MarR family); Similar to SP|P37503 (percent identity: 28 %/query alignment coverage: 86.9 %/subject alignment coverage: 84.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -81. (145 aa)
XF_1489Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (213 aa)
XF_1641Conserved hypothetical protein; Similar to GI|2804528 (percent identity: 28 %/query alignment coverage: 71.8 %/subject alignment coverage: 101.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (863 aa)
uppPUndecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (291 aa)
XF_2080Conserved hypothetical protein; Similar to GI|6685132 (percent identity: 43 %/query alignment coverage: 87.1 %/subject alignment coverage: 91.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (93 aa)
XF_2081DNA-damage-inducible protein; Similar to SP|Q47150 (percent identity: 57 %/query alignment coverage: 79.1 %/subject alignment coverage: 79.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (86 aa)
XF_2082Oxidoreductase; Similar to GI|6742158 (percent identity: 31 %/query alignment coverage: 73.5 %/subject alignment coverage: 83.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (268 aa)
XF_2083Cation efflux system protein; Similar to SP|P94177 (percent identity: 24 %/query alignment coverage: 103.4 %/subject alignment coverage: 99.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1020 aa)
XF_2084Component of multidrug efflux system; Similar to GI|1707644 (percent identity: 28 %/query alignment coverage: 97.3 %/subject alignment coverage: 86.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 72; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (368 aa)
XF_2085Transcriptional regulator (AcrR family); Similar to GI|5441765 (percent identity: 23 %/query alignment coverage: 95.1 %/subject alignment coverage: 77.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (205 aa)
XF_2093Precursor of drug resistance protein; Similar to SP|P31223 (percent identity: 42 %/query alignment coverage: 90.4 %/subject alignment coverage: 92.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (408 aa)
XF_2094Multidrug-efflux transporter; Similar to SP|P24181 (percent identity: 50 %/query alignment coverage: 98.4 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (1055 aa)
XF_2384Membrane fusion protein precursor; Similar to GI|1736780 (percent identity: 37 %/query alignment coverage: 94.6 %/subject alignment coverage: 85.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (411 aa)
XF_2385Acriflavin resistance protein D; Similar to SP|P76398 (percent identity: 50 %/query alignment coverage: 98.9 %/subject alignment coverage: 102.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -117; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1077 aa)
XF_2386Acriflavin resistance protein; Similar to SP|P76398 (percent identity: 42 %/query alignment coverage: 98.5 %/subject alignment coverage: 97.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1034 aa)
XF_2397Toxin secretion ABC transporter ATP-binding protein; Similar to SP|P10089 (percent identity: 61 %/query alignment coverage: 96.9 %/subject alignment coverage: 98.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 21. (720 aa)
XF_2398Hemolysin secretion protein D; Similar to SP|P06739 (percent identity: 39 %/query alignment coverage: 101.1 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (473 aa)
XF_2399Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (81 aa)
XF_2400Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (209 aa)
XF_2401Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (90 aa)
XF_2402Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (205 aa)
XF_2403Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (90 aa)
XF_2404Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (207 aa)
XF_2405Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (90 aa)
XF_2406Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -105. (205 aa)
XF_2407Bacteriocin; Similar to GI|2961326 (percent identity: 27 %/query alignment coverage: 56.7 %/subject alignment coverage: 122.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (2064 aa)
XF_2408Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (89 aa)
XF_2584Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (85 aa)
XF_2585protein-L-isoaspartate O-methyltransferase; Similar to SP|P24206 (percent identity: 34 %/query alignment coverage: 74.8 %/subject alignment coverage: 78.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (218 aa)
XF_2586Outer membrane export factor; Similar to SP|P02930 (percent identity: 33 %/query alignment coverage: 98.0 %/subject alignment coverage: 89.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (452 aa)
XF_2587Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (73 aa)
XF_2679Virulence protein; Similar to GI|896249 (percent identity: 28 %/query alignment coverage: 98.9 %/subject alignment coverage: 98.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (452 aa)
XF_2750Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (201 aa)
XF_2751Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (34 aa)
XF_2752Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (282 aa)
XF_2753Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (320 aa)
XF_2754Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (154 aa)
XF_2755Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (169 aa)
XF_2756Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (194 aa)
XF_2757Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (57 aa)
XF_2758Hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (170 aa)
XF_2759Hemolysin-type calcium binding protein; Similar to SP|P55127 (percent identity: 35 %/query alignment coverage: 94.0 %/subject alignment coverage: 66.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (1296 aa)
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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