STRINGSTRING
XF_2407 XF_2407 XF_0668 XF_0668 XF_1011 XF_1011 XF_2759 XF_2759
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XF_2407Bacteriocin; Similar to GI|2961326 (percent identity: 27 %/query alignment coverage: 56.7 %/subject alignment coverage: 122.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (2064 aa)
XF_0668Hemolysin-type calcium binding protein; Similar to SP|P55127 (percent identity: 32 %/query alignment coverage: 86.8 %/subject alignment coverage: 57.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (1208 aa)
XF_1011Hemolysin-type calcium binding protein; Similar to SP|P55127 (percent identity: 30 %/query alignment coverage: 78.2 %/subject alignment coverage: 69.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (1636 aa)
XF_2759Hemolysin-type calcium binding protein; Similar to SP|P55127 (percent identity: 35 %/query alignment coverage: 94.0 %/subject alignment coverage: 66.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (1296 aa)
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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