STRINGSTRING
XF_1825 XF_1825 XF_2269 XF_2269 XF_2433 XF_2433 XF_0255 XF_0255 XF_0258 XF_0258 gmd gmd XF_0610 XF_0610 XF_0611 XF_0611
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XF_1825NAD(P)H steroid dehydrogenase; Similar to GI|5052206 (percent identity: 35 %/query alignment coverage: 100.9 %/subject alignment coverage: 92.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (332 aa)
XF_22693-alpha-hydroxysteroid dehydrogenase; Similar to GI|6460829 (percent identity: 34 %/query alignment coverage: 96.5 %/subject alignment coverage: 96.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (255 aa)
XF_2433Epimerase/dehydratase protein; Similar to SP|P39853 (percent identity: 37 %/query alignment coverage: 88.5 %/subject alignment coverage: 93.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (635 aa)
XF_0255dTDP-glucose 4,6-dehydratase; Similar to SP|P55295 (percent identity: 76 %/query alignment coverage: 97.7 %/subject alignment coverage: 98.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (353 aa)
XF_0258dTDP-4-keto-L-rhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (302 aa)
gmdGDP-mannose 4,6 dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (346 aa)
XF_0610UDP-glucose 4-epimerase; Similar to SP|Q45291 (percent identity: 27 %/query alignment coverage: 93.9 %/subject alignment coverage: 84.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 87. (295 aa)
XF_0611dTDP-glucose 4-6-dehydratase; Similar to GI|1653195 (percent identity: 63 %/query alignment coverage: 94.8 %/subject alignment coverage: 95.1 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -66. (329 aa)
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.