Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMM53084.1 | AMM54300.1 | TQ32_00190 | TQ32_07280 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | Replication protein A protects and stabilize the intermediate ssDNA that is generated by the unwinding action of a DNA helicase at the replication fork. In addition, SSBs prevent the formation of secondary structures by single-stranded template DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.624 |
| AMM53084.1 | endA | TQ32_00190 | TQ32_01030 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | Ribonuclease BN; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. | 0.408 |
| AMM53084.1 | fen | TQ32_00190 | TQ32_09715 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | 0.742 |
| AMM53084.1 | lig | TQ32_00190 | TQ32_08710 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.513 |
| AMM53084.1 | radB | TQ32_00190 | TQ32_00210 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | DNA repair protein RadB; Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange. | 0.775 |
| AMM53084.1 | tbp | TQ32_00190 | TQ32_05510 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. | 0.426 |
| AMM53108.1 | AMM53784.1 | TQ32_00315 | TQ32_04255 | Digeranylgeranylglycerophospholipid reductase; Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3- diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di- O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.598 |
| AMM53108.1 | AMM53804.1 | TQ32_00315 | TQ32_04370 | Digeranylgeranylglycerophospholipid reductase; Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3- diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di- O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains. | 4-hydroxybenzoate polyprenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.946 |
| AMM53108.1 | ubiA | TQ32_00315 | TQ32_06920 | Digeranylgeranylglycerophospholipid reductase; Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3- diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di- O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains. | Prenyltransferase UbiA-like protein; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. | 0.968 |
| AMM53120.1 | AMM53780.1 | TQ32_00380 | TQ32_04235 | Polyhydroxyalkanoate depolymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.854 |
| AMM53120.1 | endA | TQ32_00380 | TQ32_01030 | Polyhydroxyalkanoate depolymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease BN; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. | 0.522 |
| AMM53120.1 | flpA | TQ32_00380 | TQ32_06760 | Polyhydroxyalkanoate depolymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Fibrillin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.644 |
| AMM53120.1 | radB | TQ32_00380 | TQ32_00210 | Polyhydroxyalkanoate depolymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA repair protein RadB; Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange. | 0.425 |
| AMM53120.1 | ubiA | TQ32_00380 | TQ32_06920 | Polyhydroxyalkanoate depolymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Prenyltransferase UbiA-like protein; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. | 0.416 |
| AMM53133.1 | AMM53896.1 | TQ32_00450 | TQ32_04925 | DNA repair protein Rad25; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA repair helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.844 |
| AMM53133.1 | fen | TQ32_00450 | TQ32_09715 | DNA repair protein Rad25; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flap endonuclease-1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. A [...] | 0.767 |
| AMM53133.1 | rpl40e | TQ32_00450 | TQ32_10095 | DNA repair protein Rad25; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L40; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL40 family. | 0.564 |
| AMM53133.1 | tbp | TQ32_00450 | TQ32_05510 | DNA repair protein Rad25; Derived by automated computational analysis using gene prediction method: Protein Homology. | TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. | 0.817 |
| AMM53133.1 | tfe | TQ32_00450 | TQ32_03500 | DNA repair protein Rad25; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription factor; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to [...] | 0.844 |
| AMM53163.1 | AMM53913.1 | TQ32_00625 | TQ32_05020 | Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Electron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.401 |
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