STRINGSTRING
rpl19e rpl19e AMM54916.1 AMM54916.1 rpl34e rpl34e pdxS pdxS rps19e rps19e rps17e rps17e rnp2 rnp2 rpl24e rpl24e rpl7ae rpl7ae rpl30e rpl30e AMM54608.1 AMM54608.1 rnp4 rnp4 rps4 rps4 truB truB srp54 srp54 AMM54472.1 AMM54472.1 AMM54434.1 AMM54434.1 rps5 rps5 rpl32e rpl32e rnp1 rnp1 AMM54409.1 AMM54409.1 rps3 rps3 rps19p rps19p rpl35ae rpl35ae srp19 srp19 rnp3 rnp3 rpl37ae rpl37ae flpA flpA AMM54207.1 AMM54207.1 rps3ae rps3ae AMM54115.1 AMM54115.1 nop10 nop10 AMM53988.1 AMM53988.1 rpl15e rpl15e rpl31e rpl31e eif6 eif6 AMM53334.1 AMM53334.1 rpl44e rpl44e rps24e rps24e
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl19e50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (150 aa)
AMM54916.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
rpl34e50S ribosomal protein L34; The function of this protein in the ribosome is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL34 family. (90 aa)
pdxSPyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (328 aa)
rps19e30S ribosomal protein S19; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (150 aa)
rps17e30S ribosomal protein S17e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family. (67 aa)
rnp2Ribonuclease P protein component 2; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (120 aa)
rpl24e50S ribosomal protein L24; Binds to the 23S rRNA. (67 aa)
rpl7ae50S ribosomal protein L7; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (123 aa)
rpl30e50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL30 family. (99 aa)
AMM54608.1RNA-processing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
rnp4Ribonuclease P; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (114 aa)
rps430S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (180 aa)
truBH/ACA RNA-protein complex component Cbf5p; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. (334 aa)
srp54Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (443 aa)
AMM54472.1Nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
AMM54434.1H/ACA RNA-protein complex protein Gar1; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)
rps530S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (236 aa)
rpl32e50S ribosomal protein L32; Contacts helix 25 of domain II of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL32 family. (130 aa)
rnp1Ribonuclease P; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. (98 aa)
AMM54409.1Protein translation factor SUI1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family. (98 aa)
rps330S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (209 aa)
rps19p30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (132 aa)
rpl35ae50S ribosomal protein L35; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
srp19Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP. (100 aa)
rnp3Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. (207 aa)
rpl37ae50S ribosomal protein L37; Binds to the 23S rRNA. (83 aa)
flpAFibrillin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (227 aa)
AMM54207.1C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
rps3ae30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family. (199 aa)
AMM54115.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
nop10Ribosome biogenesis protein Nop10; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. (60 aa)
AMM53988.1Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
rpl15e50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL15 family. (194 aa)
rpl31e50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribosomal protein L31e family. (94 aa)
eif6Translation initiation factor 6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (227 aa)
AMM53334.1Tyrosine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
rpl44e50S ribosomal protein L44; Binds to the 23S rRNA. (94 aa)
rps24e30S ribosomal protein S24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS24 family. (100 aa)
Your Current Organism:
Pyrococcus kukulkanii
NCBI taxonomy Id: 1609559
Other names: DSM 101590, P. kukulkanii, Pyrococcus kukulkanii Callac et al. 2016, Pyrococcus sp. NCB100, Souchotheque de Bretagne BG1337, strain NCB100
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